Cluster: HRGMv2_4555_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4555
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4555_36 | HRGMv2_4555_36_1 | 113 | 2434 | - | GT35 |
| CAZyme | HRGMv2_4555_36 | HRGMv2_4555_36_2 | 2588 | 4069 | - | GH77 |
| TF | HRGMv2_4555_36 | HRGMv2_4555_36_3 | 4083 | 5090 | - | LacI |
| TC | HRGMv2_4555_36 | HRGMv2_4555_36_4 | 5111 | 5968 | - | 3.A.1.1.45 |
| TC | HRGMv2_4555_36 | HRGMv2_4555_36_5 | 5968 | 6882 | - | 3.A.1.1.45 |
| TC | HRGMv2_4555_36 | HRGMv2_4555_36_6 | 7139 | 8530 | - | 3.A.1.1.45 |
| peptidase | HRGMv2_4555_36 | HRGMv2_4555_36_7 | 8899 | 10638 | + | M03.UPW |
| TC | HRGMv2_4555_36 | HRGMv2_4555_36_8 | 10658 | 12385 | + | 3.A.1.135.5 |
| TC | HRGMv2_4555_36 | HRGMv2_4555_36_9 | 12382 | 14130 | + | 3.A.1.135.5 |
| pfam | HRGMv2_4555_36 | HRGMv2_4555_36_10 | 14234 | 15337 | + | AAA_28 |
| pfam | HRGMv2_4555_36 | HRGMv2_4555_36_11 | 15427 | 16419 | - | BPD_transp_2 |
| TC | HRGMv2_4555_36 | HRGMv2_4555_36_12 | 16423 | 17511 | - | 3.A.1.2.12 |
| TC | HRGMv2_4555_36 | HRGMv2_4555_36_13 | 17504 | 19042 | - | 3.A.1.2.17 |
Gene ID: HRGMv2_4555_36_1
Type: CAZyme
Location: 113 - 2434 (-)
Type: CAZyme
Location: 113 - 2434 (-)
Gene ID: HRGMv2_4555_36_2
Type: CAZyme
Location: 2588 - 4069 (-)
Type: CAZyme
Location: 2588 - 4069 (-)
Gene ID: HRGMv2_4555_36_3
Type: TF
Location: 4083 - 5090 (-)
Type: TF
Location: 4083 - 5090 (-)
Gene ID: HRGMv2_4555_36_4
Type: TC
Location: 5111 - 5968 (-)
Type: TC
Location: 5111 - 5968 (-)
Gene ID: HRGMv2_4555_36_5
Type: TC
Location: 5968 - 6882 (-)
Type: TC
Location: 5968 - 6882 (-)
Gene ID: HRGMv2_4555_36_6
Type: TC
Location: 7139 - 8530 (-)
Type: TC
Location: 7139 - 8530 (-)
Gene ID: HRGMv2_4555_36_7
Type: peptidase
Location: 8899 - 10638 (+)
Type: peptidase
Location: 8899 - 10638 (+)
Gene ID: HRGMv2_4555_36_8
Type: TC
Location: 10658 - 12385 (+)
Type: TC
Location: 10658 - 12385 (+)
Gene ID: HRGMv2_4555_36_9
Type: TC
Location: 12382 - 14130 (+)
Type: TC
Location: 12382 - 14130 (+)
Gene ID: HRGMv2_4555_36_10
Type: pfam
Location: 14234 - 15337 (+)
Type: pfam
Location: 14234 - 15337 (+)
Gene ID: HRGMv2_4555_36_11
Type: pfam
Location: 15427 - 16419 (-)
Type: pfam
Location: 15427 - 16419 (-)
Gene ID: HRGMv2_4555_36_12
Type: TC
Location: 16423 - 17511 (-)
Type: TC
Location: 16423 - 17511 (-)
Gene ID: HRGMv2_4555_36_13
Type: TC
Location: 17504 - 19042 (-)
Type: TC
Location: 17504 - 19042 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp934661715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4555_36_3 | vegetarian > vegan | 1.38582 | 0.00022 |
| HRGMv2_4555_36_6 | vegetarian > vegan | 1.44119 | 0.00022 |
| HRGMv2_4555_36_8 | vegetarian > vegan | 1.30801 | 0.00022 |
| HRGMv2_4555_36_10 | vegetarian > vegan | 1.16943 | 0.00022 |