Cluster: HRGMv2_4555_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4555
- CGC Family ID: CGCFAM_00387
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4555_12 | HRGMv2_4555_12_8 | 7009 | 8274 | + | CE4 |
| STP | HRGMv2_4555_12 | HRGMv2_4555_12_9 | 8710 | 9336 | + | TetR_N |
| TC | HRGMv2_4555_12 | HRGMv2_4555_12_10 | 9457 | 11229 | + | 3.A.1.21.1 |
| TC | HRGMv2_4555_12 | HRGMv2_4555_12_11 | 11232 | 12980 | + | 3.A.1.21.1 |
Gene ID: HRGMv2_4555_12_8
Type: CAZyme
Location: 7009 - 8274 (+)
Type: CAZyme
Location: 7009 - 8274 (+)
Gene ID: HRGMv2_4555_12_9
Type: STP
Location: 8710 - 9336 (+)
Type: STP
Location: 8710 - 9336 (+)
Gene ID: HRGMv2_4555_12_10
Type: TC
Location: 9457 - 11229 (+)
Type: TC
Location: 9457 - 11229 (+)
Gene ID: HRGMv2_4555_12_11
Type: TC
Location: 11232 - 12980 (+)
Type: TC
Location: 11232 - 12980 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp934661715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4555_12_9 | vegetarian > vegan | 3.00960 | 0.00022 |