Cluster: HRGMv2_4555_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4555
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4555_1 | HRGMv2_4555_1_17 | 18277 | 19146 | - | 3.A.1.1.45 |
| TC | HRGMv2_4555_1 | HRGMv2_4555_1_18 | 19160 | 20110 | - | 3.A.1.1.11 |
| NULL(UNKNOWN) | HRGMv2_4555_1 | HRGMv2_4555_1_19 | 20231 | 21604 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_4555_1 | HRGMv2_4555_1_20 | 21675 | 22694 | - | LacI |
| CAZyme | HRGMv2_4555_1 | HRGMv2_4555_1_21 | 23069 | 25507 | + | GH94 |
| CAZyme | HRGMv2_4555_1 | HRGMv2_4555_1_22 | 25509 | 26849 | + | GH1 |
Gene ID: HRGMv2_4555_1_17
Type: TC
Location: 18277 - 19146 (-)
Type: TC
Location: 18277 - 19146 (-)
Gene ID: HRGMv2_4555_1_18
Type: TC
Location: 19160 - 20110 (-)
Type: TC
Location: 19160 - 20110 (-)
Gene ID: HRGMv2_4555_1_19
Type:
Location: 20231 - 21604 (-)
Type:
Location: 20231 - 21604 (-)
Gene ID: HRGMv2_4555_1_20
Type: TF
Location: 21675 - 22694 (-)
Type: TF
Location: 21675 - 22694 (-)
Gene ID: HRGMv2_4555_1_21
Type: CAZyme
Location: 23069 - 25507 (+)
Type: CAZyme
Location: 23069 - 25507 (+)
Gene ID: HRGMv2_4555_1_22
Type: CAZyme
Location: 25509 - 26849 (+)
Type: CAZyme
Location: 25509 - 26849 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp934661715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.