Cluster: HRGMv2_4555_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4555
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4555_71 | HRGMv2_4555_71_1 | 380 | 2479 | - | GH3 |
| TF | HRGMv2_4555_71 | HRGMv2_4555_71_2 | 2730 | 3425 | + | Trans_reg_C |
| STP | HRGMv2_4555_71 | HRGMv2_4555_71_3 | 3422 | 4855 | + | HATPase_c | HisKA |
| TC | HRGMv2_4555_71 | HRGMv2_4555_71_4 | 5031 | 6407 | + | 9.B.160.1.10 |
Gene ID: HRGMv2_4555_71_1
Type: CAZyme
Location: 380 - 2479 (-)
Type: CAZyme
Location: 380 - 2479 (-)
Gene ID: HRGMv2_4555_71_2
Type: TF
Location: 2730 - 3425 (+)
Type: TF
Location: 2730 - 3425 (+)
Gene ID: HRGMv2_4555_71_3
Type: STP
Location: 3422 - 4855 (+)
Type: STP
Location: 3422 - 4855 (+)
Gene ID: HRGMv2_4555_71_4
Type: TC
Location: 5031 - 6407 (+)
Type: TC
Location: 5031 - 6407 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp934661715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4555_71_1 | vegetarian > vegan | 1.53357 | 0.00022 |
| HRGMv2_4555_71_3 | vegetarian > vegan | 1.15864 | 0.00022 |