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Cluster: HRGMv2_4555_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4555_1 HRGMv2_4555_1_2 1699 4038 - 3.A.9.1.2
pfam HRGMv2_4555_1 HRGMv2_4555_1_3 4133 5296 - DUF5711
pfam HRGMv2_4555_1 HRGMv2_4555_1_4 5286 6050 - PseudoU_synth_1 | PseudoU_synth_1
TC HRGMv2_4555_1 HRGMv2_4555_1_5 6064 6867 - 3.A.1.25.4
TC HRGMv2_4555_1 HRGMv2_4555_1_6 6861 7730 - 3.A.1.26.7
TC HRGMv2_4555_1 HRGMv2_4555_1_7 7749 8603 - 3.A.1.26.7
pfam HRGMv2_4555_1 HRGMv2_4555_1_8 8609 9472 - Cons_hypoth95 | Methyltransf_15 | Methyltrans_SAM
CAZyme HRGMv2_4555_1 HRGMv2_4555_1_9 9487 11964 - GT51
Gene ID: HRGMv2_4555_1_2
Type: TC
Location: 1699 - 4038 (-)
Gene ID: HRGMv2_4555_1_3
Type: pfam
Location: 4133 - 5296 (-)
Gene ID: HRGMv2_4555_1_4
Type: pfam
Location: 5286 - 6050 (-)
Gene ID: HRGMv2_4555_1_5
Type: TC
Location: 6064 - 6867 (-)
Gene ID: HRGMv2_4555_1_6
Type: TC
Location: 6861 - 7730 (-)
Gene ID: HRGMv2_4555_1_7
Type: TC
Location: 7749 - 8603 (-)
Gene ID: HRGMv2_4555_1_8
Type: pfam
Location: 8609 - 9472 (-)
Gene ID: HRGMv2_4555_1_9
Type: CAZyme
Location: 9487 - 11964 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4555_1_3 vegetarian > vegan 1.00222 0.00022

🧭 Explore Read Mapping of CGC

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