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Cluster: HRGMv2_4545_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4545_1 HRGMv2_4545_1_240 269695 270333 - 9.B.28.1.3
TC HRGMv2_4545_1 HRGMv2_4545_1_241 270495 271334 - 3.A.1.1.47
TC HRGMv2_4545_1 HRGMv2_4545_1_242 271350 272222 - 3.A.1.1.18
STP HRGMv2_4545_1 HRGMv2_4545_1_243 272295 273620 - SBP_bac_1
CAZyme HRGMv2_4545_1 HRGMv2_4545_1_244 273701 277399 - GH3
CAZyme HRGMv2_4545_1 HRGMv2_4545_1_245 277723 279723 + GH42
CAZyme HRGMv2_4545_1 HRGMv2_4545_1_246 279755 281401 + CBM91 | GH43_11
TC HRGMv2_4545_1 HRGMv2_4545_1_247 281616 283151 + 2.A.21.2.5
pfam HRGMv2_4545_1 HRGMv2_4545_1_248 283226 284488 - Orn_DAP_Arg_deC | Orn_Arg_deC_N
TF HRGMv2_4545_1 HRGMv2_4545_1_249 284812 285297 + MarR
TC HRGMv2_4545_1 HRGMv2_4545_1_250 285294 287534 + 3.A.1.135.7
TC HRGMv2_4545_1 HRGMv2_4545_1_251 287531 289435 + 3.A.1.135.6
Gene ID: HRGMv2_4545_1_240
Type: TC
Location: 269695 - 270333 (-)
Gene ID: HRGMv2_4545_1_241
Type: TC
Location: 270495 - 271334 (-)
Gene ID: HRGMv2_4545_1_242
Type: TC
Location: 271350 - 272222 (-)
Gene ID: HRGMv2_4545_1_243
Type: STP
Location: 272295 - 273620 (-)
Gene ID: HRGMv2_4545_1_244
Type: CAZyme
Location: 273701 - 277399 (-)
Gene ID: HRGMv2_4545_1_245
Type: CAZyme
Location: 277723 - 279723 (+)
Gene ID: HRGMv2_4545_1_246
Type: CAZyme
Location: 279755 - 281401 (+)
Gene ID: HRGMv2_4545_1_247
Type: TC
Location: 281616 - 283151 (+)
Gene ID: HRGMv2_4545_1_248
Type: pfam
Location: 283226 - 284488 (-)
Gene ID: HRGMv2_4545_1_249
Type: TF
Location: 284812 - 285297 (+)
Gene ID: HRGMv2_4545_1_250
Type: TC
Location: 285294 - 287534 (+)
Gene ID: HRGMv2_4545_1_251
Type: TC
Location: 287531 - 289435 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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