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Cluster: HRGMv2_4545_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4545_6 HRGMv2_4545_6_96 100903 101601 + 3.A.1.132.6
NULL(UNKNOWN) HRGMv2_4545_6 HRGMv2_4545_6_97 101595 102413 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4545_6 HRGMv2_4545_6_98 102788 103177 + OAD_gamma
TC HRGMv2_4545_6 HRGMv2_4545_6_99 103263 104513 + 3.B.1.1.3
pfam HRGMv2_4545_6 HRGMv2_4545_6_100 104707 105237 + Fumerase_C
TC HRGMv2_4545_6 HRGMv2_4545_6_101 105244 106413 + 2.A.4.7.4
TF HRGMv2_4545_6 HRGMv2_4545_6_102 106460 107302 - HTH_AraC | HTH_AraC
pfam HRGMv2_4545_6 HRGMv2_4545_6_103 107557 108408 + AP_endonuc_2
CAZyme HRGMv2_4545_6 HRGMv2_4545_6_104 108437 109501 + GH179
pfam HRGMv2_4545_6 HRGMv2_4545_6_105 109518 110381 + AP_endonuc_2
TC HRGMv2_4545_6 HRGMv2_4545_6_106 110641 111945 + 2.A.66.1.34
Gene ID: HRGMv2_4545_6_96
Type: TC
Location: 100903 - 101601 (+)
Gene ID: HRGMv2_4545_6_97
Type:
Location: 101595 - 102413 (+)
Gene ID: HRGMv2_4545_6_98
Type: pfam
Location: 102788 - 103177 (+)
Gene ID: HRGMv2_4545_6_99
Type: TC
Location: 103263 - 104513 (+)
Gene ID: HRGMv2_4545_6_100
Type: pfam
Location: 104707 - 105237 (+)
Gene ID: HRGMv2_4545_6_101
Type: TC
Location: 105244 - 106413 (+)
Gene ID: HRGMv2_4545_6_102
Type: TF
Location: 106460 - 107302 (-)
Gene ID: HRGMv2_4545_6_103
Type: pfam
Location: 107557 - 108408 (+)
Gene ID: HRGMv2_4545_6_104
Type: CAZyme
Location: 108437 - 109501 (+)
Gene ID: HRGMv2_4545_6_105
Type: pfam
Location: 109518 - 110381 (+)
Gene ID: HRGMv2_4545_6_106
Type: TC
Location: 110641 - 111945 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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