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Cluster: HRGMv2_4545_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4545_6 HRGMv2_4545_6_13 9423 10556 - 2.A.120.1.3
pfam HRGMv2_4545_6 HRGMv2_4545_6_14 10543 11652 - Fe-ADH | Fe-ADH_2
TF HRGMv2_4545_6 HRGMv2_4545_6_15 12138 12776 - GntR
TC HRGMv2_4545_6 HRGMv2_4545_6_16 12907 13938 - 8.A.5.1.6
pfam HRGMv2_4545_6 HRGMv2_4545_6_17 14166 16817 - YfhO
TF HRGMv2_4545_6 HRGMv2_4545_6_18 17154 18044 + HTH_1
CAZyme HRGMv2_4545_6 HRGMv2_4545_6_19 18454 19764 + GH30_1
TF HRGMv2_4545_6 HRGMv2_4545_6_20 19943 20407 + MarR
TC HRGMv2_4545_6 HRGMv2_4545_6_21 20476 22221 + 3.A.1.135.5
TC HRGMv2_4545_6 HRGMv2_4545_6_22 22211 24100 + 3.A.1.135.5
STP HRGMv2_4545_6 HRGMv2_4545_6_23 24384 25400 - Peptidase_M23
NULL(UNKNOWN) HRGMv2_4545_6 HRGMv2_4545_6_24 25472 25642 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4545_6 HRGMv2_4545_6_25 25684 26409 - 9.B.18.1.3
TC HRGMv2_4545_6 HRGMv2_4545_6_26 26699 29284 - 3.A.1.122.2
Gene ID: HRGMv2_4545_6_13
Type: TC
Location: 9423 - 10556 (-)
Gene ID: HRGMv2_4545_6_14
Type: pfam
Location: 10543 - 11652 (-)
Gene ID: HRGMv2_4545_6_15
Type: TF
Location: 12138 - 12776 (-)
Gene ID: HRGMv2_4545_6_16
Type: TC
Location: 12907 - 13938 (-)
Gene ID: HRGMv2_4545_6_17
Type: pfam
Location: 14166 - 16817 (-)
Gene ID: HRGMv2_4545_6_18
Type: TF
Location: 17154 - 18044 (+)
Gene ID: HRGMv2_4545_6_19
Type: CAZyme
Location: 18454 - 19764 (+)
Gene ID: HRGMv2_4545_6_20
Type: TF
Location: 19943 - 20407 (+)
Gene ID: HRGMv2_4545_6_21
Type: TC
Location: 20476 - 22221 (+)
Gene ID: HRGMv2_4545_6_22
Type: TC
Location: 22211 - 24100 (+)
Gene ID: HRGMv2_4545_6_23
Type: STP
Location: 24384 - 25400 (-)
Gene ID: HRGMv2_4545_6_24
Type:
Location: 25472 - 25642 (-)
Gene ID: HRGMv2_4545_6_25
Type: TC
Location: 25684 - 26409 (-)
Gene ID: HRGMv2_4545_6_26
Type: TC
Location: 26699 - 29284 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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