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Cluster: HRGMv2_4543_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4543_27 HRGMv2_4543_27_8 9099 11066 + GH18
pfam HRGMv2_4543_27 HRGMv2_4543_27_9 11421 12266 + DegV
pfam HRGMv2_4543_27 HRGMv2_4543_27_10 12335 13177 + ATP_bind_3
TC HRGMv2_4543_27 HRGMv2_4543_27_11 13240 14310 - 3.A.1.11.7
TC HRGMv2_4543_27 HRGMv2_4543_27_12 14343 15158 - 3.A.1.11.8
TC HRGMv2_4543_27 HRGMv2_4543_27_13 15155 15946 - 3.A.1.11.8
TC HRGMv2_4543_27 HRGMv2_4543_27_14 15949 17367 - 3.A.1.11.8
CAZyme HRGMv2_4543_27 HRGMv2_4543_27_15 17745 21365 + GH13_28
Gene ID: HRGMv2_4543_27_8
Type: CAZyme
Location: 9099 - 11066 (+)
Gene ID: HRGMv2_4543_27_9
Type: pfam
Location: 11421 - 12266 (+)
Gene ID: HRGMv2_4543_27_10
Type: pfam
Location: 12335 - 13177 (+)
Gene ID: HRGMv2_4543_27_11
Type: TC
Location: 13240 - 14310 (-)
Gene ID: HRGMv2_4543_27_12
Type: TC
Location: 14343 - 15158 (-)
Gene ID: HRGMv2_4543_27_13
Type: TC
Location: 15155 - 15946 (-)
Gene ID: HRGMv2_4543_27_14
Type: TC
Location: 15949 - 17367 (-)
Gene ID: HRGMv2_4543_27_15
Type: CAZyme
Location: 17745 - 21365 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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