Cluster: HRGMv2_4543_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4543
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4543_20 | HRGMv2_4543_20_3 | 3327 | 5729 | + | GH13_42 |
| TF | HRGMv2_4543_20 | HRGMv2_4543_20_4 | 6023 | 6805 | + | HTH_3 |
| pfam | HRGMv2_4543_20 | HRGMv2_4543_20_5 | 7026 | 7871 | - | HAD |
| TC | HRGMv2_4543_20 | HRGMv2_4543_20_6 | 7936 | 8919 | - | 1.I.1.1.3 |
Gene ID: HRGMv2_4543_20_3
Type: CAZyme
Location: 3327 - 5729 (+)
Type: CAZyme
Location: 3327 - 5729 (+)
Gene ID: HRGMv2_4543_20_4
Type: TF
Location: 6023 - 6805 (+)
Type: TF
Location: 6023 - 6805 (+)
Gene ID: HRGMv2_4543_20_5
Type: pfam
Location: 7026 - 7871 (-)
Type: pfam
Location: 7026 - 7871 (-)
Gene ID: HRGMv2_4543_20_6
Type: TC
Location: 7936 - 8919 (-)
Type: TC
Location: 7936 - 8919 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E sp019415945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.