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Cluster: HRGMv2_4543_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4543_36 HRGMv2_4543_36_2 1209 2168 - GT2
pfam HRGMv2_4543_36 HRGMv2_4543_36_3 2465 4009 - DUF4340
pfam HRGMv2_4543_36 HRGMv2_4543_36_4 4009 5616 - ABC_transp_aux | DUF7088
TC HRGMv2_4543_36 HRGMv2_4543_36_5 5631 6335 - 3.A.1.132.1
TC HRGMv2_4543_36 HRGMv2_4543_36_6 6335 7300 - 3.A.1.132.1
pfam HRGMv2_4543_36 HRGMv2_4543_36_7 7545 7901 + SpoVAC_SpoVAEB
pfam HRGMv2_4543_36 HRGMv2_4543_36_8 8189 8722 - PAP2 | PAP2_3
TC HRGMv2_4543_36 HRGMv2_4543_36_9 8841 9851 - 9.A.11.1.1
NULL(UNKNOWN) HRGMv2_4543_36 HRGMv2_4543_36_10 10588 12912 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4543_36 HRGMv2_4543_36_11 13333 14982 - GH13_36
Gene ID: HRGMv2_4543_36_2
Type: CAZyme
Location: 1209 - 2168 (-)
Gene ID: HRGMv2_4543_36_3
Type: pfam
Location: 2465 - 4009 (-)
Gene ID: HRGMv2_4543_36_4
Type: pfam
Location: 4009 - 5616 (-)
Gene ID: HRGMv2_4543_36_5
Type: TC
Location: 5631 - 6335 (-)
Gene ID: HRGMv2_4543_36_6
Type: TC
Location: 6335 - 7300 (-)
Gene ID: HRGMv2_4543_36_7
Type: pfam
Location: 7545 - 7901 (+)
Gene ID: HRGMv2_4543_36_8
Type: pfam
Location: 8189 - 8722 (-)
Gene ID: HRGMv2_4543_36_9
Type: TC
Location: 8841 - 9851 (-)
Gene ID: HRGMv2_4543_36_10
Type:
Location: 10588 - 12912 (-)
Gene ID: HRGMv2_4543_36_11
Type: CAZyme
Location: 13333 - 14982 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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