Cluster: HRGMv2_4543_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4543
- CGC Family ID: CGCFAM_00237
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4543_32 | HRGMv2_4543_32_70 | 77860 | 79329 | + | 3.D.10.1.4 |
| pfam | HRGMv2_4543_32 | HRGMv2_4543_32_71 | 79326 | 80168 | + | QRPTase_C | QRPTase_N |
| CAZyme | HRGMv2_4543_32 | HRGMv2_4543_32_72 | 80360 | 82444 | + | GH13_11 |
| TC | HRGMv2_4543_32 | HRGMv2_4543_32_73 | 82572 | 83714 | - | 2.A.4.7.6 |
| NULL(UNKNOWN) | HRGMv2_4543_32 | HRGMv2_4543_32_74 | 83900 | 84217 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4543_32 | HRGMv2_4543_32_75 | 84663 | 86741 | - | 3.A.3.6.10 |
Gene ID: HRGMv2_4543_32_70
Type: TC
Location: 77860 - 79329 (+)
Type: TC
Location: 77860 - 79329 (+)
Gene ID: HRGMv2_4543_32_71
Type: pfam
Location: 79326 - 80168 (+)
Type: pfam
Location: 79326 - 80168 (+)
Gene ID: HRGMv2_4543_32_72
Type: CAZyme
Location: 80360 - 82444 (+)
Type: CAZyme
Location: 80360 - 82444 (+)
Gene ID: HRGMv2_4543_32_73
Type: TC
Location: 82572 - 83714 (-)
Type: TC
Location: 82572 - 83714 (-)
Gene ID: HRGMv2_4543_32_74
Type:
Location: 83900 - 84217 (-)
Type:
Location: 83900 - 84217 (-)
Gene ID: HRGMv2_4543_32_75
Type: TC
Location: 84663 - 86741 (-)
Type: TC
Location: 84663 - 86741 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Ruminococcus_E
Species
Ruminococcus_E sp019415945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4543_32_71 | vegetarian > vegan | 2.92954 | 0.03116 |