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Cluster: HRGMv2_4541_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4541_27 HRGMv2_4541_27_1 84 482 + 1.A.22.1.3
pfam HRGMv2_4541_27 HRGMv2_4541_27_2 549 1859 - Zn_Ribbon_1
TC HRGMv2_4541_27 HRGMv2_4541_27_3 2040 3014 - 2.A.6.4.3
TC HRGMv2_4541_27 HRGMv2_4541_27_4 3011 4432 - 2.A.6.4.2
TC HRGMv2_4541_27 HRGMv2_4541_27_5 4683 5099 - 3.A.2.1.5
TC HRGMv2_4541_27 HRGMv2_4541_27_6 5096 6493 - 3.A.2.1.5
TC HRGMv2_4541_27 HRGMv2_4541_27_7 6790 7695 - 3.A.2.1.5
TC HRGMv2_4541_27 HRGMv2_4541_27_8 7707 9731 - 3.A.2.1.7
pfam HRGMv2_4541_27 HRGMv2_4541_27_9 9728 10219 - ATP-synt_B
TC HRGMv2_4541_27 HRGMv2_4541_27_10 10237 10461 - 3.A.2.1.2
TC HRGMv2_4541_27 HRGMv2_4541_27_11 10499 11182 - 3.A.2.1.5
NULL(UNKNOWN) HRGMv2_4541_27 HRGMv2_4541_27_12 11367 11714 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4541_27 HRGMv2_4541_27_13 11721 12662 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme HRGMv2_4541_27 HRGMv2_4541_27_14 12659 13795 - GT4
NULL(UNKNOWN) HRGMv2_4541_27 HRGMv2_4541_27_15 13792 14016 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4541_27 HRGMv2_4541_27_16 14017 15159 - GT4
pfam HRGMv2_4541_27 HRGMv2_4541_27_17 15161 16198 - Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
pfam HRGMv2_4541_27 HRGMv2_4541_27_18 16375 17439 - NTP_transferase | NTP_transf_3 | ManC_GMP_beta-helix
TC HRGMv2_4541_27 HRGMv2_4541_27_19 17436 18821 - 9.B.18.1.3
Gene ID: HRGMv2_4541_27_1
Type: TC
Location: 84 - 482 (+)
Gene ID: HRGMv2_4541_27_2
Type: pfam
Location: 549 - 1859 (-)
Gene ID: HRGMv2_4541_27_3
Type: TC
Location: 2040 - 3014 (-)
Gene ID: HRGMv2_4541_27_4
Type: TC
Location: 3011 - 4432 (-)
Gene ID: HRGMv2_4541_27_5
Type: TC
Location: 4683 - 5099 (-)
Gene ID: HRGMv2_4541_27_6
Type: TC
Location: 5096 - 6493 (-)
Gene ID: HRGMv2_4541_27_7
Type: TC
Location: 6790 - 7695 (-)
Gene ID: HRGMv2_4541_27_8
Type: TC
Location: 7707 - 9731 (-)
Gene ID: HRGMv2_4541_27_9
Type: pfam
Location: 9728 - 10219 (-)
Gene ID: HRGMv2_4541_27_10
Type: TC
Location: 10237 - 10461 (-)
Gene ID: HRGMv2_4541_27_11
Type: TC
Location: 10499 - 11182 (-)
Gene ID: HRGMv2_4541_27_12
Type:
Location: 11367 - 11714 (-)
Gene ID: HRGMv2_4541_27_13
Type: pfam
Location: 11721 - 12662 (-)
Gene ID: HRGMv2_4541_27_14
Type: CAZyme
Location: 12659 - 13795 (-)
Gene ID: HRGMv2_4541_27_15
Type:
Location: 13792 - 14016 (-)
Gene ID: HRGMv2_4541_27_16
Type: CAZyme
Location: 14017 - 15159 (-)
Gene ID: HRGMv2_4541_27_17
Type: pfam
Location: 15161 - 16198 (-)
Gene ID: HRGMv2_4541_27_18
Type: pfam
Location: 16375 - 17439 (-)
Gene ID: HRGMv2_4541_27_19
Type: TC
Location: 17436 - 18821 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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