Cluster: HRGMv2_4541_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4541
- CGC Family ID: CGCFAM_02510
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4541_22 | HRGMv2_4541_22_2 | 2539 | 6372 | + | CBM22 | CBM22 | GH10 | GH43_16 |
| CAZyme | HRGMv2_4541_22 | HRGMv2_4541_22_3 | 6645 | 9563 | + | CBM22 | CE1 | GH30_8 |
| pfam | HRGMv2_4541_22 | HRGMv2_4541_22_4 | 9940 | 10914 | + | HMGL-like |
| TC | HRGMv2_4541_22 | HRGMv2_4541_22_5 | 10954 | 12570 | - | 1.A.13.2.3 |
Gene ID: HRGMv2_4541_22_2
Type: CAZyme
Location: 2539 - 6372 (+)
Type: CAZyme
Location: 2539 - 6372 (+)
Gene ID: HRGMv2_4541_22_3
Type: CAZyme
Location: 6645 - 9563 (+)
Type: CAZyme
Location: 6645 - 9563 (+)
Gene ID: HRGMv2_4541_22_4
Type: pfam
Location: 9940 - 10914 (+)
Type: pfam
Location: 9940 - 10914 (+)
Gene ID: HRGMv2_4541_22_5
Type: TC
Location: 10954 - 12570 (-)
Type: TC
Location: 10954 - 12570 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp002362135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.