Cluster: HRGMv2_4541_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4541
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4541_21 | HRGMv2_4541_21_12 | 14149 | 15051 | + | 3.A.1.3.29 |
| TC | HRGMv2_4541_21 | HRGMv2_4541_21_13 | 15257 | 15961 | + | 3.A.1.3.5 |
| TC | HRGMv2_4541_21 | HRGMv2_4541_21_14 | 15977 | 16732 | + | 3.A.1.3.14 |
| pfam | HRGMv2_4541_21 | HRGMv2_4541_21_15 | 16792 | 17352 | - | Cons_hypoth95 | MTS | Methyltransf_31 |
| CAZyme | HRGMv2_4541_21 | HRGMv2_4541_21_16 | 17526 | 19211 | + | GH5_1 |
Gene ID: HRGMv2_4541_21_12
Type: TC
Location: 14149 - 15051 (+)
Type: TC
Location: 14149 - 15051 (+)
Gene ID: HRGMv2_4541_21_13
Type: TC
Location: 15257 - 15961 (+)
Type: TC
Location: 15257 - 15961 (+)
Gene ID: HRGMv2_4541_21_14
Type: TC
Location: 15977 - 16732 (+)
Type: TC
Location: 15977 - 16732 (+)
Gene ID: HRGMv2_4541_21_15
Type: pfam
Location: 16792 - 17352 (-)
Type: pfam
Location: 16792 - 17352 (-)
Gene ID: HRGMv2_4541_21_16
Type: CAZyme
Location: 17526 - 19211 (+)
Type: CAZyme
Location: 17526 - 19211 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp002362135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.