Cluster: HRGMv2_4541_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4541
- CGC Family ID: CGCFAM_03164
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4541_3 | HRGMv2_4541_3_40 | 42778 | 45885 | + | CBM13 | CBM35 | CE12 | CE12 |
| pfam | HRGMv2_4541_3 | HRGMv2_4541_3_41 | 46022 | 46366 | - | DUF7668 |
| pfam | HRGMv2_4541_3 | HRGMv2_4541_3_42 | 46499 | 46684 | - | Ribosomal_L28 |
| TC | HRGMv2_4541_3 | HRGMv2_4541_3_43 | 46951 | 47652 | + | 9.B.149.1.11 |
Gene ID: HRGMv2_4541_3_40
Type: CAZyme
Location: 42778 - 45885 (+)
Type: CAZyme
Location: 42778 - 45885 (+)
Gene ID: HRGMv2_4541_3_41
Type: pfam
Location: 46022 - 46366 (-)
Type: pfam
Location: 46022 - 46366 (-)
Gene ID: HRGMv2_4541_3_42
Type: pfam
Location: 46499 - 46684 (-)
Type: pfam
Location: 46499 - 46684 (-)
Gene ID: HRGMv2_4541_3_43
Type: TC
Location: 46951 - 47652 (+)
Type: TC
Location: 46951 - 47652 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp002362135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.