Cluster: HRGMv2_4541_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4541
- CGC Family ID: CGCFAM_10642
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4541_50 | HRGMv2_4541_50_4 | 2310 | 4706 | + | CBM3 | GH9 |
| CAZyme | HRGMv2_4541_50 | HRGMv2_4541_50_5 | 5033 | 8059 | + | CBM4 | GH9 |
| pfam | HRGMv2_4541_50 | HRGMv2_4541_50_6 | 8288 | 9166 | + | YicC-like_N | YicC-like_C |
| pfam | HRGMv2_4541_50 | HRGMv2_4541_50_7 | 9170 | 9427 | + | RemA-like |
| TC | HRGMv2_4541_50 | HRGMv2_4541_50_8 | 9417 | 10025 | + | 8.A.24.1.3 |
| pfam | HRGMv2_4541_50 | HRGMv2_4541_50_9 | 10018 | 10221 | + | RNA_pol_Rpb6 |
| TC | HRGMv2_4541_50 | HRGMv2_4541_50_10 | 10223 | 12667 | + | 3.A.11.3.1 |
Gene ID: HRGMv2_4541_50_4
Type: CAZyme
Location: 2310 - 4706 (+)
Type: CAZyme
Location: 2310 - 4706 (+)
Gene ID: HRGMv2_4541_50_5
Type: CAZyme
Location: 5033 - 8059 (+)
Type: CAZyme
Location: 5033 - 8059 (+)
Gene ID: HRGMv2_4541_50_6
Type: pfam
Location: 8288 - 9166 (+)
Type: pfam
Location: 8288 - 9166 (+)
Gene ID: HRGMv2_4541_50_7
Type: pfam
Location: 9170 - 9427 (+)
Type: pfam
Location: 9170 - 9427 (+)
Gene ID: HRGMv2_4541_50_8
Type: TC
Location: 9417 - 10025 (+)
Type: TC
Location: 9417 - 10025 (+)
Gene ID: HRGMv2_4541_50_9
Type: pfam
Location: 10018 - 10221 (+)
Type: pfam
Location: 10018 - 10221 (+)
Gene ID: HRGMv2_4541_50_10
Type: TC
Location: 10223 - 12667 (+)
Type: TC
Location: 10223 - 12667 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp002362135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.