Cluster: HRGMv2_4541_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4541
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4541_38 | HRGMv2_4541_38_104 | 106211 | 107857 | + | 3.A.1.5.2 |
| NULL(UNKNOWN) | HRGMv2_4541_38 | HRGMv2_4541_38_105 | 107928 | 108458 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4541_38 | HRGMv2_4541_38_106 | 108854 | 110650 | + | CBM48 | GH13_9 |
| TF | HRGMv2_4541_38 | HRGMv2_4541_38_107 | 110834 | 113050 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4541_38 | HRGMv2_4541_38_108 | 113299 | 116424 | + | CBM13 | PL11 |
| TC | HRGMv2_4541_38 | HRGMv2_4541_38_109 | 116620 | 118545 | + | 3.A.1.121.4 |
Gene ID: HRGMv2_4541_38_104
Type: TC
Location: 106211 - 107857 (+)
Type: TC
Location: 106211 - 107857 (+)
Gene ID: HRGMv2_4541_38_105
Type:
Location: 107928 - 108458 (-)
Type:
Location: 107928 - 108458 (-)
Gene ID: HRGMv2_4541_38_106
Type: CAZyme
Location: 108854 - 110650 (+)
Type: CAZyme
Location: 108854 - 110650 (+)
Gene ID: HRGMv2_4541_38_107
Type: TF
Location: 110834 - 113050 (-)
Type: TF
Location: 110834 - 113050 (-)
Gene ID: HRGMv2_4541_38_108
Type: CAZyme
Location: 113299 - 116424 (+)
Type: CAZyme
Location: 113299 - 116424 (+)
Gene ID: HRGMv2_4541_38_109
Type: TC
Location: 116620 - 118545 (+)
Type: TC
Location: 116620 - 118545 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp002362135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.