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Cluster: HRGMv2_4540_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4540_159 HRGMv2_4540_159_13 11222 12271 + 9.B.146.1.6
TC HRGMv2_4540_159 HRGMv2_4540_159_14 12308 13483 + 2.A.103.1.3
CAZyme HRGMv2_4540_159 HRGMv2_4540_159_15 13498 14622 + GT28
pfam HRGMv2_4540_159 HRGMv2_4540_159_16 14647 15624 + POTRA_1
pfam HRGMv2_4540_159 HRGMv2_4540_159_17 15933 17036 + Tubulin | FtsZ_C
TC HRGMv2_4540_159 HRGMv2_4540_159_18 17251 18195 + 1.A.35.3.4
TF HRGMv2_4540_159 HRGMv2_4540_159_19 18230 18445 - HTH_3
pfam HRGMv2_4540_159 HRGMv2_4540_159_20 18442 18753 - DUF6442
TC HRGMv2_4540_159 HRGMv2_4540_159_21 18960 20330 - 2.A.25.1.3
Gene ID: HRGMv2_4540_159_13
Type: TC
Location: 11222 - 12271 (+)
Gene ID: HRGMv2_4540_159_14
Type: TC
Location: 12308 - 13483 (+)
Gene ID: HRGMv2_4540_159_15
Type: CAZyme
Location: 13498 - 14622 (+)
Gene ID: HRGMv2_4540_159_16
Type: pfam
Location: 14647 - 15624 (+)
Gene ID: HRGMv2_4540_159_17
Type: pfam
Location: 15933 - 17036 (+)
Gene ID: HRGMv2_4540_159_18
Type: TC
Location: 17251 - 18195 (+)
Gene ID: HRGMv2_4540_159_19
Type: TF
Location: 18230 - 18445 (-)
Gene ID: HRGMv2_4540_159_20
Type: pfam
Location: 18442 - 18753 (-)
Gene ID: HRGMv2_4540_159_21
Type: TC
Location: 18960 - 20330 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4540_159_17 vegetarian > vegan 1.05197 0.01287

🧭 Explore Read Mapping of CGC

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