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Cluster: HRGMv2_4540_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4540_384 HRGMv2_4540_384_3 2544 4040 + 3.A.1.2.20
TC HRGMv2_4540_384 HRGMv2_4540_384_4 4040 5080 + 3.A.1.2.13
TC HRGMv2_4540_384 HRGMv2_4540_384_5 5216 5866 - 1.C.113.1.4
pfam HRGMv2_4540_384 HRGMv2_4540_384_6 5994 6512 + DUF1836
pfam HRGMv2_4540_384 HRGMv2_4540_384_7 6549 7247 - DNA_alkylation
CAZyme HRGMv2_4540_384 HRGMv2_4540_384_8 7244 8590 - GH3
pfam HRGMv2_4540_384 HRGMv2_4540_384_9 8622 9620 + tRNA-synt_1c
pfam HRGMv2_4540_384 HRGMv2_4540_384_10 9634 10104 + DUF1648
TC HRGMv2_4540_384 HRGMv2_4540_384_11 10251 10538 + 9.B.10.1.1
Gene ID: HRGMv2_4540_384_3
Type: TC
Location: 2544 - 4040 (+)
Gene ID: HRGMv2_4540_384_4
Type: TC
Location: 4040 - 5080 (+)
Gene ID: HRGMv2_4540_384_5
Type: TC
Location: 5216 - 5866 (-)
Gene ID: HRGMv2_4540_384_6
Type: pfam
Location: 5994 - 6512 (+)
Gene ID: HRGMv2_4540_384_7
Type: pfam
Location: 6549 - 7247 (-)
Gene ID: HRGMv2_4540_384_8
Type: CAZyme
Location: 7244 - 8590 (-)
Gene ID: HRGMv2_4540_384_9
Type: pfam
Location: 8622 - 9620 (+)
Gene ID: HRGMv2_4540_384_10
Type: pfam
Location: 9634 - 10104 (+)
Gene ID: HRGMv2_4540_384_11
Type: TC
Location: 10251 - 10538 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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