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Cluster: HRGMv2_4538_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4538_9 HRGMv2_4538_9_24 23533 24603 - 1.A.23.4.2
pfam HRGMv2_4538_9 HRGMv2_4538_9_25 24773 25777 - DUF4349
CAZyme HRGMv2_4538_9 HRGMv2_4538_9_26 26052 27593 + GH77
CAZyme HRGMv2_4538_9 HRGMv2_4538_9_27 27595 29862 + GT35
pfam HRGMv2_4538_9 HRGMv2_4538_9_28 29921 30223 + Se_S_carrier
TC HRGMv2_4538_9 HRGMv2_4538_9_29 30678 32561 + 3.A.1.106.3
TC HRGMv2_4538_9 HRGMv2_4538_9_30 32554 34401 + 3.A.1.135.7
TC HRGMv2_4538_9 HRGMv2_4538_9_31 34672 35991 + 2.A.66.1.45
TF HRGMv2_4538_9 HRGMv2_4538_9_32 36199 36909 + HTH_3
pfam HRGMv2_4538_9 HRGMv2_4538_9_33 37266 37787 + Macro
TC HRGMv2_4538_9 HRGMv2_4538_9_34 38280 38855 - 2.A.107.1.2
Gene ID: HRGMv2_4538_9_24
Type: TC
Location: 23533 - 24603 (-)
Gene ID: HRGMv2_4538_9_25
Type: pfam
Location: 24773 - 25777 (-)
Gene ID: HRGMv2_4538_9_26
Type: CAZyme
Location: 26052 - 27593 (+)
Gene ID: HRGMv2_4538_9_27
Type: CAZyme
Location: 27595 - 29862 (+)
Gene ID: HRGMv2_4538_9_28
Type: pfam
Location: 29921 - 30223 (+)
Gene ID: HRGMv2_4538_9_29
Type: TC
Location: 30678 - 32561 (+)
Gene ID: HRGMv2_4538_9_30
Type: TC
Location: 32554 - 34401 (+)
Gene ID: HRGMv2_4538_9_31
Type: TC
Location: 34672 - 35991 (+)
Gene ID: HRGMv2_4538_9_32
Type: TF
Location: 36199 - 36909 (+)
Gene ID: HRGMv2_4538_9_33
Type: pfam
Location: 37266 - 37787 (+)
Gene ID: HRGMv2_4538_9_34
Type: TC
Location: 38280 - 38855 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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