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Cluster: HRGMv2_4538_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4538_8 HRGMv2_4538_8_98 103406 104611 - GT4
CAZyme HRGMv2_4538_8 HRGMv2_4538_8_99 104640 105770 - GT4
CAZyme HRGMv2_4538_8 HRGMv2_4538_8_100 105831 107102 - GT4
TC HRGMv2_4538_8 HRGMv2_4538_8_101 107143 107826 - 9.B.18.1.3
pfam HRGMv2_4538_8 HRGMv2_4538_8_102 107835 109034 - Aminotran_1_2 | DegT_DnrJ_EryC1 | Cys_Met_Meta_PP
NULL(UNKNOWN) HRGMv2_4538_8 HRGMv2_4538_8_103 109143 110588 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4538_8 HRGMv2_4538_8_104 110635 112557 - 9.B.18.2.1
TC HRGMv2_4538_8 HRGMv2_4538_8_105 112935 113381 - 2.A.79.1.7
TC HRGMv2_4538_8 HRGMv2_4538_8_106 113412 114236 - 2.A.79.1.5
TC HRGMv2_4538_8 HRGMv2_4538_8_107 114425 115600 + 2.A.4.7.6
Gene ID: HRGMv2_4538_8_98
Type: CAZyme
Location: 103406 - 104611 (-)
Gene ID: HRGMv2_4538_8_99
Type: CAZyme
Location: 104640 - 105770 (-)
Gene ID: HRGMv2_4538_8_100
Type: CAZyme
Location: 105831 - 107102 (-)
Gene ID: HRGMv2_4538_8_101
Type: TC
Location: 107143 - 107826 (-)
Gene ID: HRGMv2_4538_8_102
Type: pfam
Location: 107835 - 109034 (-)
Gene ID: HRGMv2_4538_8_103
Type:
Location: 109143 - 110588 (-)
Gene ID: HRGMv2_4538_8_104
Type: TC
Location: 110635 - 112557 (-)
Gene ID: HRGMv2_4538_8_105
Type: TC
Location: 112935 - 113381 (-)
Gene ID: HRGMv2_4538_8_106
Type: TC
Location: 113412 - 114236 (-)
Gene ID: HRGMv2_4538_8_107
Type: TC
Location: 114425 - 115600 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4538_8_107 omnivore > vegetarian 2.03217 0.02107

🧭 Explore Read Mapping of CGC

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