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Cluster: HRGMv2_4538_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4538_7 HRGMv2_4538_7_38 32966 33361 - 9.B.70.1.1
pfam HRGMv2_4538_7 HRGMv2_4538_7_39 33375 33569 - SpoIIIAC
pfam HRGMv2_4538_7 HRGMv2_4538_7_40 33601 33996 - Spore_III_AB
TC HRGMv2_4538_7 HRGMv2_4538_7_41 34196 35182 - 9.B.70.1.1
CAZyme HRGMv2_4538_7 HRGMv2_4538_7_42 35359 36504 - CE9
pfam HRGMv2_4538_7 HRGMv2_4538_7_43 36522 37241 - Methyltransf_4
pfam HRGMv2_4538_7 HRGMv2_4538_7_44 37460 38761 - SDH_alpha
TC HRGMv2_4538_7 HRGMv2_4538_7_45 39029 39820 - 3.A.1.34.1
TC HRGMv2_4538_7 HRGMv2_4538_7_46 39820 40704 - 3.A.1.34.1
pfam HRGMv2_4538_7 HRGMv2_4538_7_47 40804 41865 - tRNA-synt_1b
TC HRGMv2_4538_7 HRGMv2_4538_7_48 41920 42945 - 3.A.1.34.1
Gene ID: HRGMv2_4538_7_38
Type: TC
Location: 32966 - 33361 (-)
Gene ID: HRGMv2_4538_7_39
Type: pfam
Location: 33375 - 33569 (-)
Gene ID: HRGMv2_4538_7_40
Type: pfam
Location: 33601 - 33996 (-)
Gene ID: HRGMv2_4538_7_41
Type: TC
Location: 34196 - 35182 (-)
Gene ID: HRGMv2_4538_7_42
Type: CAZyme
Location: 35359 - 36504 (-)
Gene ID: HRGMv2_4538_7_43
Type: pfam
Location: 36522 - 37241 (-)
Gene ID: HRGMv2_4538_7_44
Type: pfam
Location: 37460 - 38761 (-)
Gene ID: HRGMv2_4538_7_45
Type: TC
Location: 39029 - 39820 (-)
Gene ID: HRGMv2_4538_7_46
Type: TC
Location: 39820 - 40704 (-)
Gene ID: HRGMv2_4538_7_47
Type: pfam
Location: 40804 - 41865 (-)
Gene ID: HRGMv2_4538_7_48
Type: TC
Location: 41920 - 42945 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4538_7_43 omnivore > vegetarian 3.16229 0.03290

🧭 Explore Read Mapping of CGC

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