Cluster: HRGMv2_4538_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4538
- CGC Family ID: CGCFAM_02498
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4538_3 | HRGMv2_4538_3_100 | 108913 | 110259 | + | 2.A.66.1.22 |
| TC | HRGMv2_4538_3 | HRGMv2_4538_3_101 | 110328 | 111776 | - | 2.A.21.9.2 |
| TF | HRGMv2_4538_3 | HRGMv2_4538_3_102 | 111766 | 112437 | - | Trans_reg_C |
| CAZyme | HRGMv2_4538_3 | HRGMv2_4538_3_103 | 112740 | 115124 | - | GT51 |
Gene ID: HRGMv2_4538_3_100
Type: TC
Location: 108913 - 110259 (+)
Type: TC
Location: 108913 - 110259 (+)
Gene ID: HRGMv2_4538_3_101
Type: TC
Location: 110328 - 111776 (-)
Type: TC
Location: 110328 - 111776 (-)
Gene ID: HRGMv2_4538_3_102
Type: TF
Location: 111766 - 112437 (-)
Type: TF
Location: 111766 - 112437 (-)
Gene ID: HRGMv2_4538_3_103
Type: CAZyme
Location: 112740 - 115124 (-)
Type: CAZyme
Location: 112740 - 115124 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Negativibacillus
Species
Negativibacillus sp019423685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4538_3_102 | omnivore > vegetarian | 3.99873 | 0.03290 |