Cluster: HRGMv2_4538_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4538
- CGC Family ID: CGCFAM_01624
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4538_20 | HRGMv2_4538_20_4 | 2885 | 4210 | - | GT8 |
| TF | HRGMv2_4538_20 | HRGMv2_4538_20_5 | 4237 | 5139 | - | HTH_1 |
| TC | HRGMv2_4538_20 | HRGMv2_4538_20_6 | 5279 | 7042 | + | 3.A.1.135.5 |
| TC | HRGMv2_4538_20 | HRGMv2_4538_20_7 | 7042 | 8793 | + | 3.A.1.135.5 |
| STP | HRGMv2_4538_20 | HRGMv2_4538_20_8 | 9069 | 10718 | - | CBS | CBS |
| TC | HRGMv2_4538_20 | HRGMv2_4538_20_9 | 11190 | 12707 | + | 3.A.1.121.3 |
Gene ID: HRGMv2_4538_20_4
Type: CAZyme
Location: 2885 - 4210 (-)
Type: CAZyme
Location: 2885 - 4210 (-)
Gene ID: HRGMv2_4538_20_5
Type: TF
Location: 4237 - 5139 (-)
Type: TF
Location: 4237 - 5139 (-)
Gene ID: HRGMv2_4538_20_6
Type: TC
Location: 5279 - 7042 (+)
Type: TC
Location: 5279 - 7042 (+)
Gene ID: HRGMv2_4538_20_7
Type: TC
Location: 7042 - 8793 (+)
Type: TC
Location: 7042 - 8793 (+)
Gene ID: HRGMv2_4538_20_8
Type: STP
Location: 9069 - 10718 (-)
Type: STP
Location: 9069 - 10718 (-)
Gene ID: HRGMv2_4538_20_9
Type: TC
Location: 11190 - 12707 (+)
Type: TC
Location: 11190 - 12707 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Negativibacillus
Species
Negativibacillus sp019423685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4538_20_8 | omnivore > vegetarian | 1.60259 | 0.02312 |