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Cluster: HRGMv2_4537_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4537_11 HRGMv2_4537_11_23 21977 24415 - GT35
CAZyme HRGMv2_4537_11 HRGMv2_4537_11_24 24552 25988 - GT5
pfam HRGMv2_4537_11 HRGMv2_4537_11_25 26336 27454 - NTP_transferase | Hexapep_GlmU
pfam HRGMv2_4537_11 HRGMv2_4537_11_26 27451 28638 - NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_4537_11 HRGMv2_4537_11_27 28707 30878 - CBM48 | GH13_9
peptidase HRGMv2_4537_11 HRGMv2_4537_11_28 31146 32288 - S11.005
STP HRGMv2_4537_11 HRGMv2_4537_11_29 32472 33344 + SBP_bac_3
TC HRGMv2_4537_11 HRGMv2_4537_11_30 33442 34164 + 3.A.1.3.12
TC HRGMv2_4537_11 HRGMv2_4537_11_31 34179 34964 + 3.A.1.3.10
NULL(UNKNOWN) HRGMv2_4537_11 HRGMv2_4537_11_32 35023 35367 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4537_11 HRGMv2_4537_11_33 35364 35555 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4537_11 HRGMv2_4537_11_34 35606 36127 - 9.B.156.3.1
TC HRGMv2_4537_11 HRGMv2_4537_11_35 36129 36707 - 9.B.156.3.1
Gene ID: HRGMv2_4537_11_23
Type: CAZyme
Location: 21977 - 24415 (-)
Gene ID: HRGMv2_4537_11_24
Type: CAZyme
Location: 24552 - 25988 (-)
Gene ID: HRGMv2_4537_11_25
Type: pfam
Location: 26336 - 27454 (-)
Gene ID: HRGMv2_4537_11_26
Type: pfam
Location: 27451 - 28638 (-)
Gene ID: HRGMv2_4537_11_27
Type: CAZyme
Location: 28707 - 30878 (-)
Gene ID: HRGMv2_4537_11_28
Type: peptidase
Location: 31146 - 32288 (-)
Gene ID: HRGMv2_4537_11_29
Type: STP
Location: 32472 - 33344 (+)
Gene ID: HRGMv2_4537_11_30
Type: TC
Location: 33442 - 34164 (+)
Gene ID: HRGMv2_4537_11_31
Type: TC
Location: 34179 - 34964 (+)
Gene ID: HRGMv2_4537_11_32
Type:
Location: 35023 - 35367 (+)
Gene ID: HRGMv2_4537_11_33
Type:
Location: 35364 - 35555 (+)
Gene ID: HRGMv2_4537_11_34
Type: TC
Location: 35606 - 36127 (-)
Gene ID: HRGMv2_4537_11_35
Type: TC
Location: 36129 - 36707 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4537_11_34 vegetarian > vegan 1.14185 0.00455

🧭 Explore Read Mapping of CGC

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