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Cluster: HRGMv2_4537_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4537_43 HRGMv2_4537_43_1 1 717 + 2.A.103.1.7
pfam HRGMv2_4537_43 HRGMv2_4537_43_2 704 2062 + Transpeptidase
NULL(UNKNOWN) HRGMv2_4537_43 HRGMv2_4537_43_3 2839 3471 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4537_43 HRGMv2_4537_43_4 3614 4351 + 3.A.1.26.7
pfam HRGMv2_4537_43 HRGMv2_4537_43_5 4354 5277 + SUFBD_core
pfam HRGMv2_4537_43 HRGMv2_4537_43_6 5258 5686 + 4HBT | 4HBT_3 | DUF4442
CAZyme HRGMv2_4537_43 HRGMv2_4537_43_7 5755 7257 - GH77
TF HRGMv2_4537_43 HRGMv2_4537_43_8 7287 8303 - LacI
TC HRGMv2_4537_43 HRGMv2_4537_43_9 8384 9226 - 3.A.1.1.45
TC HRGMv2_4537_43 HRGMv2_4537_43_10 9226 10077 - 3.A.1.1.45
TC HRGMv2_4537_43 HRGMv2_4537_43_11 10238 11611 - 3.A.1.1.45
Gene ID: HRGMv2_4537_43_1
Type: TC
Location: 1 - 717 (+)
Gene ID: HRGMv2_4537_43_2
Type: pfam
Location: 704 - 2062 (+)
Gene ID: HRGMv2_4537_43_3
Type:
Location: 2839 - 3471 (-)
Gene ID: HRGMv2_4537_43_4
Type: TC
Location: 3614 - 4351 (+)
Gene ID: HRGMv2_4537_43_5
Type: pfam
Location: 4354 - 5277 (+)
Gene ID: HRGMv2_4537_43_6
Type: pfam
Location: 5258 - 5686 (+)
Gene ID: HRGMv2_4537_43_7
Type: CAZyme
Location: 5755 - 7257 (-)
Gene ID: HRGMv2_4537_43_8
Type: TF
Location: 7287 - 8303 (-)
Gene ID: HRGMv2_4537_43_9
Type: TC
Location: 8384 - 9226 (-)
Gene ID: HRGMv2_4537_43_10
Type: TC
Location: 9226 - 10077 (-)
Gene ID: HRGMv2_4537_43_11
Type: TC
Location: 10238 - 11611 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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