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Cluster: HRGMv2_4535_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4535_18 HRGMv2_4535_18_4 2014 2985 + 3.A.1.1.10
TC HRGMv2_4535_18 HRGMv2_4535_18_5 3002 3886 + 3.A.1.1.29
STP HRGMv2_4535_18 HRGMv2_4535_18_6 3923 5488 + SBP_bac_1
CAZyme HRGMv2_4535_18 HRGMv2_4535_18_7 5625 6578 + GT108
TF HRGMv2_4535_18 HRGMv2_4535_18_8 6678 8609 + HTH_AraC
CAZyme HRGMv2_4535_18 HRGMv2_4535_18_9 8656 10917 + GH3
pfam HRGMv2_4535_18 HRGMv2_4535_18_10 11266 11526 + Ribosomal_S20p
NULL(UNKNOWN) HRGMv2_4535_18 HRGMv2_4535_18_11 11693 11842 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4535_18 HRGMv2_4535_18_12 11954 13531 - 3.A.1.5.22
Gene ID: HRGMv2_4535_18_4
Type: TC
Location: 2014 - 2985 (+)
Gene ID: HRGMv2_4535_18_5
Type: TC
Location: 3002 - 3886 (+)
Gene ID: HRGMv2_4535_18_6
Type: STP
Location: 3923 - 5488 (+)
Gene ID: HRGMv2_4535_18_7
Type: CAZyme
Location: 5625 - 6578 (+)
Gene ID: HRGMv2_4535_18_8
Type: TF
Location: 6678 - 8609 (+)
Gene ID: HRGMv2_4535_18_9
Type: CAZyme
Location: 8656 - 10917 (+)
Gene ID: HRGMv2_4535_18_10
Type: pfam
Location: 11266 - 11526 (+)
Gene ID: HRGMv2_4535_18_11
Type:
Location: 11693 - 11842 (+)
Gene ID: HRGMv2_4535_18_12
Type: TC
Location: 11954 - 13531 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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