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Cluster: HRGMv2_4534_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4534_2 HRGMv2_4534_2_52 66702 69038 + GH28
TF HRGMv2_4534_2 HRGMv2_4534_2_53 69657 70730 + HTH_AraC | HTH_AraC
TC HRGMv2_4534_2 HRGMv2_4534_2_54 70758 72611 + 8.A.59.2.1
CAZyme HRGMv2_4534_2 HRGMv2_4534_2_55 72650 75520 + CBM67 | GH78
pfam HRGMv2_4534_2 HRGMv2_4534_2_56 76129 76914 + DUF5131
CAZyme HRGMv2_4534_2 HRGMv2_4534_2_57 77039 78118 + GH29
pfam HRGMv2_4534_2 HRGMv2_4534_2_58 78555 79037 + DUF7004
CAZyme HRGMv2_4534_2 HRGMv2_4534_2_59 79194 81971 + GH2
Gene ID: HRGMv2_4534_2_52
Type: CAZyme
Location: 66702 - 69038 (+)
Gene ID: HRGMv2_4534_2_53
Type: TF
Location: 69657 - 70730 (+)
Gene ID: HRGMv2_4534_2_54
Type: TC
Location: 70758 - 72611 (+)
Gene ID: HRGMv2_4534_2_55
Type: CAZyme
Location: 72650 - 75520 (+)
Gene ID: HRGMv2_4534_2_56
Type: pfam
Location: 76129 - 76914 (+)
Gene ID: HRGMv2_4534_2_57
Type: CAZyme
Location: 77039 - 78118 (+)
Gene ID: HRGMv2_4534_2_58
Type: pfam
Location: 78555 - 79037 (+)
Gene ID: HRGMv2_4534_2_59
Type: CAZyme
Location: 79194 - 81971 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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