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Cluster: HRGMv2_4534_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4534_2 HRGMv2_4534_2_24 30097 31149 - 2.A.20.1.4
CAZyme HRGMv2_4534_2 HRGMv2_4534_2_25 31570 32703 + CE9
pfam HRGMv2_4534_2 HRGMv2_4534_2_26 32721 33383 + Asp_Glu_race
STP HRGMv2_4534_2 HRGMv2_4534_2_27 33457 35079 + SIS
TC HRGMv2_4534_2 HRGMv2_4534_2_28 35617 36804 - 9.A.28.1.1
pfam HRGMv2_4534_2 HRGMv2_4534_2_29 36817 38619 - NTP_transferase | Choline_kinase | APH | NTP_transf_3
pfam HRGMv2_4534_2 HRGMv2_4534_2_30 39120 40100 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC HRGMv2_4534_2 HRGMv2_4534_2_31 40494 42221 + 3.A.1.106.8
TC HRGMv2_4534_2 HRGMv2_4534_2_32 42218 43972 + 3.A.1.135.5
CAZyme HRGMv2_4534_2 HRGMv2_4534_2_33 44034 45038 - GH130_7
CAZyme HRGMv2_4534_2 HRGMv2_4534_2_34 45354 46367 + GT2
Gene ID: HRGMv2_4534_2_24
Type: TC
Location: 30097 - 31149 (-)
Gene ID: HRGMv2_4534_2_25
Type: CAZyme
Location: 31570 - 32703 (+)
Gene ID: HRGMv2_4534_2_26
Type: pfam
Location: 32721 - 33383 (+)
Gene ID: HRGMv2_4534_2_27
Type: STP
Location: 33457 - 35079 (+)
Gene ID: HRGMv2_4534_2_28
Type: TC
Location: 35617 - 36804 (-)
Gene ID: HRGMv2_4534_2_29
Type: pfam
Location: 36817 - 38619 (-)
Gene ID: HRGMv2_4534_2_30
Type: pfam
Location: 39120 - 40100 (-)
Gene ID: HRGMv2_4534_2_31
Type: TC
Location: 40494 - 42221 (+)
Gene ID: HRGMv2_4534_2_32
Type: TC
Location: 42218 - 43972 (+)
Gene ID: HRGMv2_4534_2_33
Type: CAZyme
Location: 44034 - 45038 (-)
Gene ID: HRGMv2_4534_2_34
Type: CAZyme
Location: 45354 - 46367 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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