Cluster: HRGMv2_4534_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4534
- CGC Family ID: CGCFAM_00202
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4534_28 | HRGMv2_4534_28_11 | 12715 | 13575 | - | 3.A.1.132.6 |
| TF | HRGMv2_4534_28 | HRGMv2_4534_28_12 | 13556 | 13939 | - | GntR |
| CAZyme | HRGMv2_4534_28 | HRGMv2_4534_28_13 | 14131 | 15852 | + | GH36 |
| pfam | HRGMv2_4534_28 | HRGMv2_4534_28_14 | 15985 | 16902 | + | MatE |
| pfam | HRGMv2_4534_28 | HRGMv2_4534_28_15 | 16902 | 17384 | + | MatE |
| TC | HRGMv2_4534_28 | HRGMv2_4534_28_16 | 17550 | 18893 | - | 2.A.66.1.33 |
Gene ID: HRGMv2_4534_28_11
Type: TC
Location: 12715 - 13575 (-)
Type: TC
Location: 12715 - 13575 (-)
Gene ID: HRGMv2_4534_28_12
Type: TF
Location: 13556 - 13939 (-)
Type: TF
Location: 13556 - 13939 (-)
Gene ID: HRGMv2_4534_28_13
Type: CAZyme
Location: 14131 - 15852 (+)
Type: CAZyme
Location: 14131 - 15852 (+)
Gene ID: HRGMv2_4534_28_14
Type: pfam
Location: 15985 - 16902 (+)
Type: pfam
Location: 15985 - 16902 (+)
Gene ID: HRGMv2_4534_28_15
Type: pfam
Location: 16902 - 17384 (+)
Type: pfam
Location: 16902 - 17384 (+)
Gene ID: HRGMv2_4534_28_16
Type: TC
Location: 17550 - 18893 (-)
Type: TC
Location: 17550 - 18893 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
JAHZIE01
Species
JAHZIE01 sp019419895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.