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Cluster: HRGMv2_4534_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4534_18 HRGMv2_4534_18_19 24590 25147 + 2.A.87.3.2
TC HRGMv2_4534_18 HRGMv2_4534_18_20 25318 26658 + 3.D.6.1.2
TC HRGMv2_4534_18 HRGMv2_4534_18_21 26726 27688 + 3.D.6.1.2
TC HRGMv2_4534_18 HRGMv2_4534_18_22 27675 28250 + 3.D.6.1.2
TC HRGMv2_4534_18 HRGMv2_4534_18_23 28252 28938 + 3.D.6.1.2
TC HRGMv2_4534_18 HRGMv2_4534_18_24 28931 29539 + 3.D.6.1.2
TC HRGMv2_4534_18 HRGMv2_4534_18_25 29585 30382 + 3.D.6.1.3
pfam HRGMv2_4534_18 HRGMv2_4534_18_26 30592 31062 + PNPOx_N | Pyridox_ox_2
CAZyme HRGMv2_4534_18 HRGMv2_4534_18_27 31578 33767 + GH31
Gene ID: HRGMv2_4534_18_19
Type: TC
Location: 24590 - 25147 (+)
Gene ID: HRGMv2_4534_18_20
Type: TC
Location: 25318 - 26658 (+)
Gene ID: HRGMv2_4534_18_21
Type: TC
Location: 26726 - 27688 (+)
Gene ID: HRGMv2_4534_18_22
Type: TC
Location: 27675 - 28250 (+)
Gene ID: HRGMv2_4534_18_23
Type: TC
Location: 28252 - 28938 (+)
Gene ID: HRGMv2_4534_18_24
Type: TC
Location: 28931 - 29539 (+)
Gene ID: HRGMv2_4534_18_25
Type: TC
Location: 29585 - 30382 (+)
Gene ID: HRGMv2_4534_18_26
Type: pfam
Location: 30592 - 31062 (+)
Gene ID: HRGMv2_4534_18_27
Type: CAZyme
Location: 31578 - 33767 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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