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Cluster: HRGMv2_4533_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4533_2 HRGMv2_4533_2_179 178726 181338 - GH3
pfam HRGMv2_4533_2 HRGMv2_4533_2_180 181875 182711 + PRD | PRD | CAT_RBD
TC HRGMv2_4533_2 HRGMv2_4533_2_181 182718 183203 + 4.A.1.1.1
NULL(UNKNOWN) HRGMv2_4533_2 HRGMv2_4533_2_182 183291 183404 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4533_2 HRGMv2_4533_2_183 183415 184758 + 4.A.1.1.7
TC HRGMv2_4533_2 HRGMv2_4533_2_184 185162 187693 + 4.C.1.1.7
TC HRGMv2_4533_2 HRGMv2_4533_2_185 187923 189644 + 2.A.103.1.7
Gene ID: HRGMv2_4533_2_179
Type: CAZyme
Location: 178726 - 181338 (-)
Gene ID: HRGMv2_4533_2_180
Type: pfam
Location: 181875 - 182711 (+)
Gene ID: HRGMv2_4533_2_181
Type: TC
Location: 182718 - 183203 (+)
Gene ID: HRGMv2_4533_2_182
Type:
Location: 183291 - 183404 (+)
Gene ID: HRGMv2_4533_2_183
Type: TC
Location: 183415 - 184758 (+)
Gene ID: HRGMv2_4533_2_184
Type: TC
Location: 185162 - 187693 (+)
Gene ID: HRGMv2_4533_2_185
Type: TC
Location: 187923 - 189644 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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