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Cluster: HRGMv2_4533_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4533_42 HRGMv2_4533_42_1 253 903 - 2.A.115.2.6
NULL(UNKNOWN) HRGMv2_4533_42 HRGMv2_4533_42_2 933 4040 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4533_42 HRGMv2_4533_42_3 4085 4867 - SpoU_methylase | SpoU_sub_bind
TC HRGMv2_4533_42 HRGMv2_4533_42_4 5387 7018 + 2.A.35.2.1
TC HRGMv2_4533_42 HRGMv2_4533_42_5 7091 8476 - 2.A.38.4.1
pfam HRGMv2_4533_42 HRGMv2_4533_42_6 8546 9142 - QueT
TC HRGMv2_4533_42 HRGMv2_4533_42_7 9441 11267 + 3.A.1.106.8
TC HRGMv2_4533_42 HRGMv2_4533_42_8 11264 13096 + 3.A.1.106.3
CAZyme HRGMv2_4533_42 HRGMv2_4533_42_9 13388 18178 + GH141
Gene ID: HRGMv2_4533_42_1
Type: TC
Location: 253 - 903 (-)
Gene ID: HRGMv2_4533_42_2
Type:
Location: 933 - 4040 (-)
Gene ID: HRGMv2_4533_42_3
Type: pfam
Location: 4085 - 4867 (-)
Gene ID: HRGMv2_4533_42_4
Type: TC
Location: 5387 - 7018 (+)
Gene ID: HRGMv2_4533_42_5
Type: TC
Location: 7091 - 8476 (-)
Gene ID: HRGMv2_4533_42_6
Type: pfam
Location: 8546 - 9142 (-)
Gene ID: HRGMv2_4533_42_7
Type: TC
Location: 9441 - 11267 (+)
Gene ID: HRGMv2_4533_42_8
Type: TC
Location: 11264 - 13096 (+)
Gene ID: HRGMv2_4533_42_9
Type: CAZyme
Location: 13388 - 18178 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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