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Cluster: HRGMv2_4533_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4533_2 HRGMv2_4533_2_64 71049 73085 - GH36
TC HRGMv2_4533_2 HRGMv2_4533_2_65 73092 73943 - 3.A.1.1.34
TC HRGMv2_4533_2 HRGMv2_4533_2_66 73943 74929 - 3.A.1.1.7
STP HRGMv2_4533_2 HRGMv2_4533_2_67 74966 76291 - SBP_bac_1
TC HRGMv2_4533_2 HRGMv2_4533_2_68 76614 78422 + 9.B.33.1.1
TF HRGMv2_4533_2 HRGMv2_4533_2_69 78427 79983 + HTH_AraC
pfam HRGMv2_4533_2 HRGMv2_4533_2_70 80061 81104 - YceG
TC HRGMv2_4533_2 HRGMv2_4533_2_71 81130 81915 - 3.A.1.3.10
TC HRGMv2_4533_2 HRGMv2_4533_2_72 81928 82650 - 3.A.1.3.12
TC HRGMv2_4533_2 HRGMv2_4533_2_73 82735 83586 - 3.A.1.3.29
Gene ID: HRGMv2_4533_2_64
Type: CAZyme
Location: 71049 - 73085 (-)
Gene ID: HRGMv2_4533_2_65
Type: TC
Location: 73092 - 73943 (-)
Gene ID: HRGMv2_4533_2_66
Type: TC
Location: 73943 - 74929 (-)
Gene ID: HRGMv2_4533_2_67
Type: STP
Location: 74966 - 76291 (-)
Gene ID: HRGMv2_4533_2_68
Type: TC
Location: 76614 - 78422 (+)
Gene ID: HRGMv2_4533_2_69
Type: TF
Location: 78427 - 79983 (+)
Gene ID: HRGMv2_4533_2_70
Type: pfam
Location: 80061 - 81104 (-)
Gene ID: HRGMv2_4533_2_71
Type: TC
Location: 81130 - 81915 (-)
Gene ID: HRGMv2_4533_2_72
Type: TC
Location: 81928 - 82650 (-)
Gene ID: HRGMv2_4533_2_73
Type: TC
Location: 82735 - 83586 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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