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Cluster: HRGMv2_4532_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4532_61 HRGMv2_4532_61_2 1291 2157 - GH25
pfam HRGMv2_4532_61 HRGMv2_4532_61_3 2236 2622 - SLH
TF HRGMv2_4532_61 HRGMv2_4532_61_4 2754 3065 + HTH_3
CAZyme HRGMv2_4532_61 HRGMv2_4532_61_5 3424 6516 - GH38
pfam HRGMv2_4532_61 HRGMv2_4532_61_6 6853 7782 - Lactamase_B
pfam HRGMv2_4532_61 HRGMv2_4532_61_7 7844 8398 + DUF4854
TC HRGMv2_4532_61 HRGMv2_4532_61_8 8523 9245 - 3.A.1.3.25
TC HRGMv2_4532_61 HRGMv2_4532_61_9 9232 9993 - 3.A.1.3.17
TC HRGMv2_4532_61 HRGMv2_4532_61_10 10075 11007 - 3.A.1.3.27
Gene ID: HRGMv2_4532_61_2
Type: CAZyme
Location: 1291 - 2157 (-)
Gene ID: HRGMv2_4532_61_3
Type: pfam
Location: 2236 - 2622 (-)
Gene ID: HRGMv2_4532_61_4
Type: TF
Location: 2754 - 3065 (+)
Gene ID: HRGMv2_4532_61_5
Type: CAZyme
Location: 3424 - 6516 (-)
Gene ID: HRGMv2_4532_61_6
Type: pfam
Location: 6853 - 7782 (-)
Gene ID: HRGMv2_4532_61_7
Type: pfam
Location: 7844 - 8398 (+)
Gene ID: HRGMv2_4532_61_8
Type: TC
Location: 8523 - 9245 (-)
Gene ID: HRGMv2_4532_61_9
Type: TC
Location: 9232 - 9993 (-)
Gene ID: HRGMv2_4532_61_10
Type: TC
Location: 10075 - 11007 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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