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Cluster: HRGMv2_4532_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4532_159 HRGMv2_4532_159_3 2374 3456 - GH172
pfam HRGMv2_4532_159 HRGMv2_4532_159_4 3950 7072 - tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915
TC HRGMv2_4532_159 HRGMv2_4532_159_5 7528 8889 + 2.A.66.1.25
TC HRGMv2_4532_159 HRGMv2_4532_159_6 9025 9843 - 3.A.1.5.16
TC HRGMv2_4532_159 HRGMv2_4532_159_7 9836 10846 - 3.A.1.5.14
TC HRGMv2_4532_159 HRGMv2_4532_159_8 10863 12110 - 3.A.1.5.16
TC HRGMv2_4532_159 HRGMv2_4532_159_9 12125 13132 - 3.A.1.5.16
TC HRGMv2_4532_159 HRGMv2_4532_159_10 13341 15254 - 3.A.1.5.16
Gene ID: HRGMv2_4532_159_3
Type: CAZyme
Location: 2374 - 3456 (-)
Gene ID: HRGMv2_4532_159_4
Type: pfam
Location: 3950 - 7072 (-)
Gene ID: HRGMv2_4532_159_5
Type: TC
Location: 7528 - 8889 (+)
Gene ID: HRGMv2_4532_159_6
Type: TC
Location: 9025 - 9843 (-)
Gene ID: HRGMv2_4532_159_7
Type: TC
Location: 9836 - 10846 (-)
Gene ID: HRGMv2_4532_159_8
Type: TC
Location: 10863 - 12110 (-)
Gene ID: HRGMv2_4532_159_9
Type: TC
Location: 12125 - 13132 (-)
Gene ID: HRGMv2_4532_159_10
Type: TC
Location: 13341 - 15254 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4532_159_7 vegetarian > vegan 1.28336 0.00782

🧭 Explore Read Mapping of CGC

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