Cluster: HRGMv2_4531_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4531
- CGC Family ID: CGCFAM_00142
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4531_94 | HRGMv2_4531_94_5 | 2078 | 2677 | + | 3.D.1.8.1 |
| NULL(UNKNOWN) | HRGMv2_4531_94 | HRGMv2_4531_94_6 | 2679 | 3257 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4531_94 | HRGMv2_4531_94_7 | 3299 | 4195 | + | 3.D.1.8.1 |
| CAZyme | HRGMv2_4531_94 | HRGMv2_4531_94_8 | 4436 | 5512 | + | GH179 |
| pfam | HRGMv2_4531_94 | HRGMv2_4531_94_9 | 5526 | 6269 | + | AP_endonuc_2 |
| pfam | HRGMv2_4531_94 | HRGMv2_4531_94_10 | 6343 | 7305 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_4531_94 | HRGMv2_4531_94_11 | 7447 | 8280 | + | GH179 |
Gene ID: HRGMv2_4531_94_5
Type: TC
Location: 2078 - 2677 (+)
Type: TC
Location: 2078 - 2677 (+)
Gene ID: HRGMv2_4531_94_6
Type:
Location: 2679 - 3257 (+)
Type:
Location: 2679 - 3257 (+)
Gene ID: HRGMv2_4531_94_7
Type: TC
Location: 3299 - 4195 (+)
Type: TC
Location: 3299 - 4195 (+)
Gene ID: HRGMv2_4531_94_8
Type: CAZyme
Location: 4436 - 5512 (+)
Type: CAZyme
Location: 4436 - 5512 (+)
Gene ID: HRGMv2_4531_94_9
Type: pfam
Location: 5526 - 6269 (+)
Type: pfam
Location: 5526 - 6269 (+)
Gene ID: HRGMv2_4531_94_10
Type: pfam
Location: 6343 - 7305 (+)
Type: pfam
Location: 6343 - 7305 (+)
Gene ID: HRGMv2_4531_94_11
Type: CAZyme
Location: 7447 - 8280 (+)
Type: CAZyme
Location: 7447 - 8280 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Howiella
Species
Howiella intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.