Cluster: HRGMv2_4531_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4531
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4531_1 | HRGMv2_4531_1_18 | 29967 | 35612 | + | CBM6 | CBM6 | GH38 |
| CAZyme | HRGMv2_4531_1 | HRGMv2_4531_1_19 | 35782 | 36618 | - | GH43_34 |
| NULL(UNKNOWN) | HRGMv2_4531_1 | HRGMv2_4531_1_20 | 36802 | 36960 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4531_1 | HRGMv2_4531_1_21 | 37001 | 37735 | - | adh_short | Epimerase | KR | adh_short_C2 |
| CAZyme | HRGMv2_4531_1 | HRGMv2_4531_1_22 | 37940 | 38995 | + | GT2 |
| pfam | HRGMv2_4531_1 | HRGMv2_4531_1_23 | 39028 | 40884 | + | E1_dh | TPP_enzyme_C | Transket_pyr | Transketolase_C | DXP_synthase_N |
| TC | HRGMv2_4531_1 | HRGMv2_4531_1_24 | 40887 | 41714 | + | 1.C.109.1.5 |
Gene ID: HRGMv2_4531_1_18
Type: CAZyme
Location: 29967 - 35612 (+)
Type: CAZyme
Location: 29967 - 35612 (+)
Gene ID: HRGMv2_4531_1_19
Type: CAZyme
Location: 35782 - 36618 (-)
Type: CAZyme
Location: 35782 - 36618 (-)
Gene ID: HRGMv2_4531_1_20
Type:
Location: 36802 - 36960 (-)
Type:
Location: 36802 - 36960 (-)
Gene ID: HRGMv2_4531_1_21
Type: pfam
Location: 37001 - 37735 (-)
Type: pfam
Location: 37001 - 37735 (-)
Gene ID: HRGMv2_4531_1_22
Type: CAZyme
Location: 37940 - 38995 (+)
Type: CAZyme
Location: 37940 - 38995 (+)
Gene ID: HRGMv2_4531_1_23
Type: pfam
Location: 39028 - 40884 (+)
Type: pfam
Location: 39028 - 40884 (+)
Gene ID: HRGMv2_4531_1_24
Type: TC
Location: 40887 - 41714 (+)
Type: TC
Location: 40887 - 41714 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Howiella
Species
Howiella intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.