Cluster: HRGMv2_4531_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4531
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4531_37 | HRGMv2_4531_37_1 | 3 | 710 | + | 3.A.1.120.6 |
| pfam | HRGMv2_4531_37 | HRGMv2_4531_37_2 | 723 | 1268 | + | Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10 | Rv0428c_C |
| TF | HRGMv2_4531_37 | HRGMv2_4531_37_3 | 1412 | 2248 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4531_37 | HRGMv2_4531_37_4 | 2462 | 7645 | + | CBM35 | CBM35 | CBM35 | CBM35 | CBM61 | GH31 |
| sulfatase | HRGMv2_4531_37 | HRGMv2_4531_37_5 | 7742 | 9331 | + | S1_50 |
| TC | HRGMv2_4531_37 | HRGMv2_4531_37_6 | 9429 | 10562 | - | 2.A.86.1.9 |
Gene ID: HRGMv2_4531_37_1
Type: TC
Location: 3 - 710 (+)
Type: TC
Location: 3 - 710 (+)
Gene ID: HRGMv2_4531_37_2
Type: pfam
Location: 723 - 1268 (+)
Type: pfam
Location: 723 - 1268 (+)
Gene ID: HRGMv2_4531_37_3
Type: TF
Location: 1412 - 2248 (-)
Type: TF
Location: 1412 - 2248 (-)
Gene ID: HRGMv2_4531_37_4
Type: CAZyme
Location: 2462 - 7645 (+)
Type: CAZyme
Location: 2462 - 7645 (+)
Gene ID: HRGMv2_4531_37_5
Type: sulfatase
Location: 7742 - 9331 (+)
Type: sulfatase
Location: 7742 - 9331 (+)
Gene ID: HRGMv2_4531_37_6
Type: TC
Location: 9429 - 10562 (-)
Type: TC
Location: 9429 - 10562 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Howiella
Species
Howiella intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.