Cluster: HRGMv2_4531_CGC11
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4531
- CGC Family ID: CGCFAM_04360
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4531_6 | HRGMv2_4531_6_10 | 18838 | 20133 | + | GH125 |
| CAZyme | HRGMv2_4531_6 | HRGMv2_4531_6_11 | 20154 | 21236 | + | GH76 |
| CAZyme | HRGMv2_4531_6 | HRGMv2_4531_6_12 | 21315 | 22958 | + | GH76 |
| CAZyme | HRGMv2_4531_6 | HRGMv2_4531_6_13 | 23127 | 24362 | + | GH76 |
| STP | HRGMv2_4531_6 | HRGMv2_4531_6_14 | 24414 | 25799 | + | SBP_bac_1 |
| CAZyme | HRGMv2_4531_6 | HRGMv2_4531_6_15 | 25898 | 27154 | + | GH76 |
| STP | HRGMv2_4531_6 | HRGMv2_4531_6_16 | 27432 | 30467 | + | SBP_bac_1 |
| TC | HRGMv2_4531_6 | HRGMv2_4531_6_17 | 30507 | 31481 | + | 3.A.1.1.34 |
| TC | HRGMv2_4531_6 | HRGMv2_4531_6_18 | 31493 | 32383 | + | 3.A.1.1.39 |
| STP | HRGMv2_4531_6 | HRGMv2_4531_6_19 | 32397 | 34523 | + | TPR_2 |
| pfam | HRGMv2_4531_6 | HRGMv2_4531_6_20 | 34523 | 37084 | + | DUF5696 |
| TC | HRGMv2_4531_6 | HRGMv2_4531_6_21 | 37100 | 38059 | + | 3.A.1.1.11 |
| TC | HRGMv2_4531_6 | HRGMv2_4531_6_22 | 38099 | 39013 | + | 3.A.1.1.11 |
Gene ID: HRGMv2_4531_6_10
Type: CAZyme
Location: 18838 - 20133 (+)
Type: CAZyme
Location: 18838 - 20133 (+)
Gene ID: HRGMv2_4531_6_11
Type: CAZyme
Location: 20154 - 21236 (+)
Type: CAZyme
Location: 20154 - 21236 (+)
Gene ID: HRGMv2_4531_6_12
Type: CAZyme
Location: 21315 - 22958 (+)
Type: CAZyme
Location: 21315 - 22958 (+)
Gene ID: HRGMv2_4531_6_13
Type: CAZyme
Location: 23127 - 24362 (+)
Type: CAZyme
Location: 23127 - 24362 (+)
Gene ID: HRGMv2_4531_6_14
Type: STP
Location: 24414 - 25799 (+)
Type: STP
Location: 24414 - 25799 (+)
Gene ID: HRGMv2_4531_6_15
Type: CAZyme
Location: 25898 - 27154 (+)
Type: CAZyme
Location: 25898 - 27154 (+)
Gene ID: HRGMv2_4531_6_16
Type: STP
Location: 27432 - 30467 (+)
Type: STP
Location: 27432 - 30467 (+)
Gene ID: HRGMv2_4531_6_17
Type: TC
Location: 30507 - 31481 (+)
Type: TC
Location: 30507 - 31481 (+)
Gene ID: HRGMv2_4531_6_18
Type: TC
Location: 31493 - 32383 (+)
Type: TC
Location: 31493 - 32383 (+)
Gene ID: HRGMv2_4531_6_19
Type: STP
Location: 32397 - 34523 (+)
Type: STP
Location: 32397 - 34523 (+)
Gene ID: HRGMv2_4531_6_20
Type: pfam
Location: 34523 - 37084 (+)
Type: pfam
Location: 34523 - 37084 (+)
Gene ID: HRGMv2_4531_6_21
Type: TC
Location: 37100 - 38059 (+)
Type: TC
Location: 37100 - 38059 (+)
Gene ID: HRGMv2_4531_6_22
Type: TC
Location: 38099 - 39013 (+)
Type: TC
Location: 38099 - 39013 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Howiella
Species
Howiella intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.