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Cluster: HRGMv2_4531_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4531_1 HRGMv2_4531_1_1 1 5568 + GH92
NULL(UNKNOWN) HRGMv2_4531_1 HRGMv2_4531_1_2 5639 5977 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4531_1 HRGMv2_4531_1_3 5982 6929 - PG_binding_1 | PG_binding_1 | Amidase_2
CAZyme HRGMv2_4531_1 HRGMv2_4531_1_4 7091 9553 + GH38
TF HRGMv2_4531_1 HRGMv2_4531_1_5 10140 11147 + LacI
CAZyme HRGMv2_4531_1 HRGMv2_4531_1_6 11150 13381 + GH36
TC HRGMv2_4531_1 HRGMv2_4531_1_7 13419 14702 + 3.A.1.1.28
TC HRGMv2_4531_1 HRGMv2_4531_1_8 14703 15596 + 3.A.1.1.28
TC HRGMv2_4531_1 HRGMv2_4531_1_9 15593 16447 + 3.A.1.1.28
CAZyme HRGMv2_4531_1 HRGMv2_4531_1_10 16457 17899 + GH13_18
Gene ID: HRGMv2_4531_1_1
Type: CAZyme
Location: 1 - 5568 (+)
Gene ID: HRGMv2_4531_1_2
Type:
Location: 5639 - 5977 (-)
Gene ID: HRGMv2_4531_1_3
Type: pfam
Location: 5982 - 6929 (-)
Gene ID: HRGMv2_4531_1_4
Type: CAZyme
Location: 7091 - 9553 (+)
Gene ID: HRGMv2_4531_1_5
Type: TF
Location: 10140 - 11147 (+)
Gene ID: HRGMv2_4531_1_6
Type: CAZyme
Location: 11150 - 13381 (+)
Gene ID: HRGMv2_4531_1_7
Type: TC
Location: 13419 - 14702 (+)
Gene ID: HRGMv2_4531_1_8
Type: TC
Location: 14703 - 15596 (+)
Gene ID: HRGMv2_4531_1_9
Type: TC
Location: 15593 - 16447 (+)
Gene ID: HRGMv2_4531_1_10
Type: CAZyme
Location: 16457 - 17899 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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