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Cluster: HRGMv2_4530_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4530_80 HRGMv2_4530_80_1 435 881 - 9.A.11.1.1
pfam HRGMv2_4530_80 HRGMv2_4530_80_2 1167 4385 + MGS | ATP-grasp | ATP-grasp | CPSase_L_D2 | CPSase_L_D2 | CPSase_L_D3 | Dala_Dala_lig_C | Dala_Dala_lig_C
CAZyme HRGMv2_4530_80 HRGMv2_4530_80_3 4485 7079 - GH106
STP HRGMv2_4530_80 HRGMv2_4530_80_4 7212 8813 - SBP_bac_1
TC HRGMv2_4530_80 HRGMv2_4530_80_5 8879 9757 - 3.A.1.1.29
TC HRGMv2_4530_80 HRGMv2_4530_80_6 9783 10736 - 3.A.1.1.29
TC HRGMv2_4530_80 HRGMv2_4530_80_7 10995 12809 + 9.B.33.1.1
Gene ID: HRGMv2_4530_80_1
Type: TC
Location: 435 - 881 (-)
Gene ID: HRGMv2_4530_80_2
Type: pfam
Location: 1167 - 4385 (+)
Gene ID: HRGMv2_4530_80_3
Type: CAZyme
Location: 4485 - 7079 (-)
Gene ID: HRGMv2_4530_80_4
Type: STP
Location: 7212 - 8813 (-)
Gene ID: HRGMv2_4530_80_5
Type: TC
Location: 8879 - 9757 (-)
Gene ID: HRGMv2_4530_80_6
Type: TC
Location: 9783 - 10736 (-)
Gene ID: HRGMv2_4530_80_7
Type: TC
Location: 10995 - 12809 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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