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Cluster: HRGMv2_4530_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4530_62 HRGMv2_4530_62_1 208 1431 + GH109
TF HRGMv2_4530_62 HRGMv2_4530_62_2 1704 2081 - 0043143
TF HRGMv2_4530_62 HRGMv2_4530_62_3 2245 2544 + HTH_3
TC HRGMv2_4530_62 HRGMv2_4530_62_4 2969 4663 + 3.A.1.5.12
TC HRGMv2_4530_62 HRGMv2_4530_62_5 4648 5094 + 3.A.1.5.12
TC HRGMv2_4530_62 HRGMv2_4530_62_6 5146 6234 + 3.A.1.5.12
TC HRGMv2_4530_62 HRGMv2_4530_62_7 6234 7445 + 3.A.1.5.12
TC HRGMv2_4530_62 HRGMv2_4530_62_8 7460 7948 + 3.A.1.5.29
Gene ID: HRGMv2_4530_62_1
Type: CAZyme
Location: 208 - 1431 (+)
Gene ID: HRGMv2_4530_62_2
Type: TF
Location: 1704 - 2081 (-)
Gene ID: HRGMv2_4530_62_3
Type: TF
Location: 2245 - 2544 (+)
Gene ID: HRGMv2_4530_62_4
Type: TC
Location: 2969 - 4663 (+)
Gene ID: HRGMv2_4530_62_5
Type: TC
Location: 4648 - 5094 (+)
Gene ID: HRGMv2_4530_62_6
Type: TC
Location: 5146 - 6234 (+)
Gene ID: HRGMv2_4530_62_7
Type: TC
Location: 6234 - 7445 (+)
Gene ID: HRGMv2_4530_62_8
Type: TC
Location: 7460 - 7948 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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