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Cluster: HRGMv2_4530_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4530_28 HRGMv2_4530_28_1 351 2006 + 2.A.58.2.2
pfam HRGMv2_4530_28 HRGMv2_4530_28_2 2099 2872 - PHP
pfam HRGMv2_4530_28 HRGMv2_4530_28_3 3007 3834 - Lactamase_B_2
TC HRGMv2_4530_28 HRGMv2_4530_28_4 3857 4693 - 3.A.1.1.28
TC HRGMv2_4530_28 HRGMv2_4530_28_5 4697 5590 - 3.A.1.1.28
STP HRGMv2_4530_28 HRGMv2_4530_28_6 5741 7054 - SBP_bac_1
TC HRGMv2_4530_28 HRGMv2_4530_28_7 7441 9351 + 8.A.59.2.1
TF HRGMv2_4530_28 HRGMv2_4530_28_8 9355 10875 + HTH_AraC | HTH_AraC
pfam HRGMv2_4530_28 HRGMv2_4530_28_9 10954 11604 - Hydrolase | HAD_2
CAZyme HRGMv2_4530_28 HRGMv2_4530_28_10 11665 13962 - GH65
Gene ID: HRGMv2_4530_28_1
Type: TC
Location: 351 - 2006 (+)
Gene ID: HRGMv2_4530_28_2
Type: pfam
Location: 2099 - 2872 (-)
Gene ID: HRGMv2_4530_28_3
Type: pfam
Location: 3007 - 3834 (-)
Gene ID: HRGMv2_4530_28_4
Type: TC
Location: 3857 - 4693 (-)
Gene ID: HRGMv2_4530_28_5
Type: TC
Location: 4697 - 5590 (-)
Gene ID: HRGMv2_4530_28_6
Type: STP
Location: 5741 - 7054 (-)
Gene ID: HRGMv2_4530_28_7
Type: TC
Location: 7441 - 9351 (+)
Gene ID: HRGMv2_4530_28_8
Type: TF
Location: 9355 - 10875 (+)
Gene ID: HRGMv2_4530_28_9
Type: pfam
Location: 10954 - 11604 (-)
Gene ID: HRGMv2_4530_28_10
Type: CAZyme
Location: 11665 - 13962 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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