Cluster: HRGMv2_4530_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4530
- CGC Family ID: CGCFAM_00818
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4530_218 | HRGMv2_4530_218_3 | 1161 | 3167 | - | GH42 |
| TC | HRGMv2_4530_218 | HRGMv2_4530_218_4 | 3692 | 4621 | + | 3.A.1.1.10 |
| TC | HRGMv2_4530_218 | HRGMv2_4530_218_5 | 4634 | 5551 | + | 3.A.1.1.29 |
| STP | HRGMv2_4530_218 | HRGMv2_4530_218_6 | 5635 | 7218 | + | SBP_bac_1 |
| TF | HRGMv2_4530_218 | HRGMv2_4530_218_7 | 7308 | 8297 | + | LacI |
| CAZyme | HRGMv2_4530_218 | HRGMv2_4530_218_8 | 8300 | 10009 | + | GH53 |
Gene ID: HRGMv2_4530_218_3
Type: CAZyme
Location: 1161 - 3167 (-)
Type: CAZyme
Location: 1161 - 3167 (-)
Gene ID: HRGMv2_4530_218_4
Type: TC
Location: 3692 - 4621 (+)
Type: TC
Location: 3692 - 4621 (+)
Gene ID: HRGMv2_4530_218_5
Type: TC
Location: 4634 - 5551 (+)
Type: TC
Location: 4634 - 5551 (+)
Gene ID: HRGMv2_4530_218_6
Type: STP
Location: 5635 - 7218 (+)
Type: STP
Location: 5635 - 7218 (+)
Gene ID: HRGMv2_4530_218_7
Type: TF
Location: 7308 - 8297 (+)
Type: TF
Location: 7308 - 8297 (+)
Gene ID: HRGMv2_4530_218_8
Type: CAZyme
Location: 8300 - 10009 (+)
Type: CAZyme
Location: 8300 - 10009 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caccousia
Species
Caccousia avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.