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Cluster: HRGMv2_4530_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4530_175 HRGMv2_4530_175_9 10384 11451 + GH179
TC HRGMv2_4530_175 HRGMv2_4530_175_10 11555 13330 + 8.A.59.2.1
TF HRGMv2_4530_175 HRGMv2_4530_175_11 13317 14906 + HTH_AraC | HTH_AraC
STP HRGMv2_4530_175 HRGMv2_4530_175_12 15122 16399 + SBP_bac_1
TC HRGMv2_4530_175 HRGMv2_4530_175_13 16499 17419 + 3.A.1.1.37
TC HRGMv2_4530_175 HRGMv2_4530_175_14 17420 18241 + 3.A.1.1.34
CAZyme HRGMv2_4530_175 HRGMv2_4530_175_15 18303 19400 + GH179
Gene ID: HRGMv2_4530_175_9
Type: CAZyme
Location: 10384 - 11451 (+)
Gene ID: HRGMv2_4530_175_10
Type: TC
Location: 11555 - 13330 (+)
Gene ID: HRGMv2_4530_175_11
Type: TF
Location: 13317 - 14906 (+)
Gene ID: HRGMv2_4530_175_12
Type: STP
Location: 15122 - 16399 (+)
Gene ID: HRGMv2_4530_175_13
Type: TC
Location: 16499 - 17419 (+)
Gene ID: HRGMv2_4530_175_14
Type: TC
Location: 17420 - 18241 (+)
Gene ID: HRGMv2_4530_175_15
Type: CAZyme
Location: 18303 - 19400 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4530_175_15 vegetarian > vegan 2.62174 0.01560

🧭 Explore Read Mapping of CGC

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