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Cluster: HRGMv2_4527_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4527_5 HRGMv2_4527_5_24 24850 26205 - GH28
TC HRGMv2_4527_5 HRGMv2_4527_5_25 26320 27153 - 3.A.1.1.39
TC HRGMv2_4527_5 HRGMv2_4527_5_26 27150 28061 - 3.A.1.1.20
STP HRGMv2_4527_5 HRGMv2_4527_5_27 28152 29402 - SBP_bac_1
TF HRGMv2_4527_5 HRGMv2_4527_5_28 29669 30352 - GntR
TC HRGMv2_4527_5 HRGMv2_4527_5_29 30649 31761 + 3.A.1.1.22
pfam HRGMv2_4527_5 HRGMv2_4527_5_30 31828 32568 + DUF624
TC HRGMv2_4527_5 HRGMv2_4527_5_31 32625 33812 - 2.A.56.1.5
TC HRGMv2_4527_5 HRGMv2_4527_5_32 33907 34401 - 2.A.56.1.5
TC HRGMv2_4527_5 HRGMv2_4527_5_33 34417 35445 - 2.A.56.1.5
Gene ID: HRGMv2_4527_5_24
Type: CAZyme
Location: 24850 - 26205 (-)
Gene ID: HRGMv2_4527_5_25
Type: TC
Location: 26320 - 27153 (-)
Gene ID: HRGMv2_4527_5_26
Type: TC
Location: 27150 - 28061 (-)
Gene ID: HRGMv2_4527_5_27
Type: STP
Location: 28152 - 29402 (-)
Gene ID: HRGMv2_4527_5_28
Type: TF
Location: 29669 - 30352 (-)
Gene ID: HRGMv2_4527_5_29
Type: TC
Location: 30649 - 31761 (+)
Gene ID: HRGMv2_4527_5_30
Type: pfam
Location: 31828 - 32568 (+)
Gene ID: HRGMv2_4527_5_31
Type: TC
Location: 32625 - 33812 (-)
Gene ID: HRGMv2_4527_5_32
Type: TC
Location: 33907 - 34401 (-)
Gene ID: HRGMv2_4527_5_33
Type: TC
Location: 34417 - 35445 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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