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Cluster: HRGMv2_4527_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4527_36 HRGMv2_4527_36_17 12514 13401 + 3.A.7.7.1
pfam HRGMv2_4527_36 HRGMv2_4527_36_18 13398 13964 + RepA_N
TC HRGMv2_4527_36 HRGMv2_4527_36_19 14757 16649 - 4.A.1.2.11
pfam HRGMv2_4527_36 HRGMv2_4527_36_20 16778 17626 - PRD | PRD | CAT_RBD
NULL(UNKNOWN) HRGMv2_4527_36 HRGMv2_4527_36_21 17656 17751 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4527_36 HRGMv2_4527_36_22 18095 19531 + GH1
TC HRGMv2_4527_36 HRGMv2_4527_36_23 19548 19856 + 4.A.3.2.9
TC HRGMv2_4527_36 HRGMv2_4527_36_24 20032 21345 + 4.A.3.2.8
TC HRGMv2_4527_36 HRGMv2_4527_36_25 21367 21681 + 4.A.3.2.8
Gene ID: HRGMv2_4527_36_17
Type: TC
Location: 12514 - 13401 (+)
Gene ID: HRGMv2_4527_36_18
Type: pfam
Location: 13398 - 13964 (+)
Gene ID: HRGMv2_4527_36_19
Type: TC
Location: 14757 - 16649 (-)
Gene ID: HRGMv2_4527_36_20
Type: pfam
Location: 16778 - 17626 (-)
Gene ID: HRGMv2_4527_36_21
Type:
Location: 17656 - 17751 (-)
Gene ID: HRGMv2_4527_36_22
Type: CAZyme
Location: 18095 - 19531 (+)
Gene ID: HRGMv2_4527_36_23
Type: TC
Location: 19548 - 19856 (+)
Gene ID: HRGMv2_4527_36_24
Type: TC
Location: 20032 - 21345 (+)
Gene ID: HRGMv2_4527_36_25
Type: TC
Location: 21367 - 21681 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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