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Cluster: HRGMv2_4527_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4527_24 HRGMv2_4527_24_17 15372 18029 - GH38
TC HRGMv2_4527_24 HRGMv2_4527_24_18 18122 19255 - 4.A.2.1.17
TC HRGMv2_4527_24 HRGMv2_4527_24_19 19259 19573 - 4.A.2.1.10
TC HRGMv2_4527_24 HRGMv2_4527_24_20 19598 20044 - 4.A.2.1.6
TF HRGMv2_4527_24 HRGMv2_4527_24_21 20167 22143 - Mga
TC HRGMv2_4527_24 HRGMv2_4527_24_22 22423 23427 - 3.A.1.2.14
TC HRGMv2_4527_24 HRGMv2_4527_24_23 23424 24458 - 3.A.1.2.25
TC HRGMv2_4527_24 HRGMv2_4527_24_24 24460 25965 - 3.A.1.2.25
TC HRGMv2_4527_24 HRGMv2_4527_24_25 26086 27111 - 3.A.1.2.25
TC HRGMv2_4527_24 HRGMv2_4527_24_26 27300 28757 - 8.A.59.2.1
Gene ID: HRGMv2_4527_24_17
Type: CAZyme
Location: 15372 - 18029 (-)
Gene ID: HRGMv2_4527_24_18
Type: TC
Location: 18122 - 19255 (-)
Gene ID: HRGMv2_4527_24_19
Type: TC
Location: 19259 - 19573 (-)
Gene ID: HRGMv2_4527_24_20
Type: TC
Location: 19598 - 20044 (-)
Gene ID: HRGMv2_4527_24_21
Type: TF
Location: 20167 - 22143 (-)
Gene ID: HRGMv2_4527_24_22
Type: TC
Location: 22423 - 23427 (-)
Gene ID: HRGMv2_4527_24_23
Type: TC
Location: 23424 - 24458 (-)
Gene ID: HRGMv2_4527_24_24
Type: TC
Location: 24460 - 25965 (-)
Gene ID: HRGMv2_4527_24_25
Type: TC
Location: 26086 - 27111 (-)
Gene ID: HRGMv2_4527_24_26
Type: TC
Location: 27300 - 28757 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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